Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   U6C02_RS11655 Genome accession   NZ_CP143843
Coordinates   2248644..2249396 (+) Length   250 a.a.
NCBI ID   WP_070082169.1    Uniprot ID   -
Organism   Bacillus velezensis strain YM-3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2243644..2254396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS11640 (U6C02_11640) - 2243867..2244058 (-) 192 WP_003152639.1 hypothetical protein -
  U6C02_RS11645 (U6C02_11645) - 2244511..2247153 (+) 2643 WP_278071207.1 valine--tRNA ligase -
  U6C02_RS11650 (U6C02_11650) - 2247212..2248504 (+) 1293 WP_330942332.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  U6C02_RS11655 (U6C02_11655) comC 2248644..2249396 (+) 753 WP_070082169.1 prepilin peptidase Machinery gene
  U6C02_RS11660 (U6C02_11660) - 2249523..2250524 (+) 1002 WP_146277259.1 SPOR domain-containing protein -
  U6C02_RS11665 (U6C02_11665) - 2250665..2251234 (+) 570 WP_070082167.1 Maf family protein -
  U6C02_RS11670 (U6C02_11670) radC 2251266..2251961 (+) 696 WP_007408165.1 RadC family protein -
  U6C02_RS11675 (U6C02_11675) mreB 2252053..2253066 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  U6C02_RS11680 (U6C02_11680) mreC 2253097..2253960 (+) 864 WP_003152649.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27106.78 Da        Isoelectric Point: 9.2521

>NTDB_id=931514 U6C02_RS11655 WP_070082169.1 2248644..2249396(+) (comC) [Bacillus velezensis strain YM-3]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=931514 U6C02_RS11655 WP_070082169.1 2248644..2249396(+) (comC) [Bacillus velezensis strain YM-3]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGATTTGCCGGAGCTGTTTGCGGATTTTTTCTGCTAGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584