Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   U6C02_RS07005 Genome accession   NZ_CP143843
Coordinates   1348032..1349177 (-) Length   381 a.a.
NCBI ID   WP_003151067.1    Uniprot ID   A0A6A8LBV3
Organism   Bacillus velezensis strain YM-3     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1343032..1354177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS06960 (U6C02_06960) speE 1343325..1344155 (+) 831 WP_003151052.1 spermidine synthase -
  U6C02_RS06965 (U6C02_06965) speB 1344215..1345087 (+) 873 WP_003151054.1 agmatinase -
  U6C02_RS06970 (U6C02_06970) - 1345257..1345475 (+) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  U6C02_RS06975 (U6C02_06975) - 1346066..1346578 (-) 513 WP_032859656.1 stage II sporulation protein M -
  U6C02_RS06980 (U6C02_06980) - 1346622..1346903 (-) 282 WP_014306021.1 hypothetical protein -
  U6C02_RS06990 (U6C02_06990) - 1347311..1347514 (-) 204 WP_003151062.1 hypothetical protein -
  U6C02_RS06995 (U6C02_06995) - 1347528..1347731 (-) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  U6C02_RS07000 (U6C02_07000) - 1347929..1348048 (-) 120 WP_003151066.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  U6C02_RS07005 (U6C02_07005) rapF 1348032..1349177 (-) 1146 WP_003151067.1 tetratricopeptide repeat protein Regulator
  U6C02_RS07010 (U6C02_07010) - 1349469..1349897 (+) 429 WP_003151069.1 DUF1934 domain-containing protein -
  U6C02_RS07015 (U6C02_07015) argS 1349894..1351564 (+) 1671 WP_003151071.1 arginine--tRNA ligase -
  U6C02_RS07020 (U6C02_07020) narK 1351699..1352889 (+) 1191 WP_003151073.1 nitrate transporter NarK -
  U6C02_RS07025 (U6C02_07025) - 1352987..1353703 (+) 717 WP_025853599.1 Crp/Fnr family transcriptional regulator -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45339.49 Da        Isoelectric Point: 4.9293

>NTDB_id=931497 U6C02_RS07005 WP_003151067.1 1348032..1349177(-) (rapF) [Bacillus velezensis strain YM-3]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELDQREYLSAIKFFKKAETKLSFIKDTIDKAEYFFKMSEVYYYLKQTYVS
TDYARQAYEIYKAQSSYDIRLIQCQSLFGANFLDLKLYDRAITHFQKAFSLAETEKQPQLMGRTLYNIALCKQSLNDYEA
AITYVEKAIDVFESAKMTPSLPQAYFLMTQIHYKLERYDKALEYHKKGVIYSEESADSVYLHEFEFLKSLYVNGPDEDAM
KRSFDFLESKMMYADIEDFALDAAKYYHKLEDYKKASTYFLKVEEARQHIQGGVTFYEAEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=931497 U6C02_RS07005 WP_003151067.1 1348032..1349177(-) (rapF) [Bacillus velezensis strain YM-3]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGATCAGCGGGAATATTTGTCGGCTATAAAATTTTTTAAAAAGGCTGAGACGAAACTCTCATTTA
TTAAGGATACTATTGATAAAGCCGAGTACTTTTTCAAGATGTCTGAAGTCTACTACTATTTGAAACAAACGTATGTATCT
ACCGATTACGCAAGGCAGGCATATGAAATATATAAAGCTCAGTCGTCATACGATATCAGGCTCATACAATGCCAATCCTT
ATTCGGAGCAAATTTCCTGGATTTAAAACTATATGATCGGGCAATTACTCACTTTCAAAAGGCTTTTTCTTTGGCAGAAA
CAGAAAAACAGCCTCAATTAATGGGCAGGACGCTGTATAACATCGCACTTTGCAAACAAAGCCTGAACGACTATGAAGCA
GCTATAACTTATGTTGAAAAAGCCATTGATGTTTTTGAAAGTGCTAAAATGACCCCTTCTTTGCCCCAAGCATATTTTTT
AATGACACAGATTCATTATAAATTAGAAAGATACGACAAAGCGCTCGAGTATCATAAAAAAGGAGTTATCTATTCCGAAG
AGTCAGCAGATTCAGTTTATTTACACGAATTCGAATTTTTAAAATCTTTGTATGTGAACGGACCTGATGAGGATGCAATG
AAACGGAGTTTTGACTTTTTGGAAAGTAAGATGATGTATGCAGATATAGAAGATTTTGCTCTTGATGCAGCTAAATATTA
TCACAAACTTGAAGATTATAAAAAAGCTTCAACATACTTTTTAAAAGTTGAAGAAGCAAGACAGCATATTCAAGGGGGGG
TAACTTTTTATGAAGCTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(223-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LBV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

74.803

100

0.748
  rapC Bacillus subtilis subsp. subtilis str. 168

53.158

99.738

0.53