Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   U6C02_RS05225 Genome accession   NZ_CP143843
Coordinates   996191..997303 (-) Length   370 a.a.
NCBI ID   WP_024084783.1    Uniprot ID   -
Organism   Bacillus velezensis strain YM-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 991191..1002303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS05210 (U6C02_05210) gyrA 991277..993736 (-) 2460 WP_004392898.1 DNA gyrase subunit A -
  U6C02_RS05215 (U6C02_05215) gyrB 993952..995868 (-) 1917 WP_004392900.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  U6C02_RS05220 (U6C02_05220) remB 995928..996173 (-) 246 WP_004392908.1 extracellular matrix regulator RemB -
  U6C02_RS05225 (U6C02_05225) recF 996191..997303 (-) 1113 WP_024084783.1 DNA replication/repair protein RecF Machinery gene
  U6C02_RS05230 (U6C02_05230) rlbA 997319..997534 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  U6C02_RS05235 (U6C02_05235) dnaN 997669..998805 (-) 1137 WP_004392911.1 DNA polymerase III subunit beta -
  U6C02_RS05240 (U6C02_05240) dnaA 998990..1000330 (-) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  U6C02_RS05245 (U6C02_05245) rpmH 1000952..1001086 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  U6C02_RS05250 (U6C02_05250) rnpA 1001241..1001591 (+) 351 WP_004392944.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42428.35 Da        Isoelectric Point: 7.0882

>NTDB_id=931493 U6C02_RS05225 WP_024084783.1 996191..997303(-) (recF) [Bacillus velezensis strain YM-3]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVARRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=931493 U6C02_RS05225 WP_024084783.1 996191..997303(-) (recF) [Bacillus velezensis strain YM-3]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAGGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGAAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAGACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAATCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTCTGAAGCTGGCTGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCTTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943