Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   U6C02_RS04995 Genome accession   NZ_CP143843
Coordinates   954491..954781 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain YM-3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 949491..959781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS04980 (U6C02_04980) - 949714..951039 (-) 1326 WP_095324173.1 G5 and 3D domain-containing protein -
  U6C02_RS04985 (U6C02_04985) - 951174..951941 (-) 768 WP_025854081.1 TatD family hydrolase -
  U6C02_RS04990 (U6C02_04990) metG 952017..954008 (-) 1992 WP_025854082.1 methionine--tRNA ligase -
  U6C02_RS04995 (U6C02_04995) abrB 954491..954781 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  U6C02_RS05000 (U6C02_05000) rsmI 954831..955712 (-) 882 WP_025854083.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  U6C02_RS05005 (U6C02_05005) - 955687..955986 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  U6C02_RS05010 (U6C02_05010) - 955973..956716 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  U6C02_RS05015 (U6C02_05015) yabA 956777..957136 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  U6C02_RS05020 (U6C02_05020) ricT 957151..957978 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  U6C02_RS05025 (U6C02_05025) holB 957981..958970 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  U6C02_RS05030 (U6C02_05030) - 958982..959422 (-) 441 WP_004264730.1 YaaR family protein -
  U6C02_RS05035 (U6C02_05035) darA 959435..959764 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=931491 U6C02_RS04995 WP_169510469.1 954491..954781(+) (abrB) [Bacillus velezensis strain YM-3]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=931491 U6C02_RS04995 WP_169510469.1 954491..954781(+) (abrB) [Bacillus velezensis strain YM-3]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGTAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979