Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   U6C02_RS03480 Genome accession   NZ_CP143843
Coordinates   675636..676073 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain YM-3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 670636..681073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS03465 (U6C02_03465) - 673494..673856 (-) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -
  U6C02_RS03470 (U6C02_03470) hxlA 674088..674723 (+) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  U6C02_RS03475 (U6C02_03475) hxlB 674720..675277 (+) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  U6C02_RS03480 (U6C02_03480) nucA/comI 675636..676073 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  U6C02_RS03485 (U6C02_03485) nin/comJ 676095..676493 (+) 399 WP_014304317.1 competence protein ComJ Regulator
  U6C02_RS03490 (U6C02_03490) - 676534..676752 (-) 219 Protein_660 family 1 glycosylhydrolase -
  U6C02_RS19775 - 676751..677029 (-) 279 WP_107890409.1 family 1 glycosylhydrolase -
  U6C02_RS03500 (U6C02_03500) - 676971..677246 (-) 276 WP_369719109.1 YckD family protein -
  U6C02_RS03505 (U6C02_03505) - 677364..677798 (-) 435 WP_003156592.1 RDD family protein -
  U6C02_RS03510 (U6C02_03510) - 677813..678949 (-) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  U6C02_RS03515 (U6C02_03515) - 679014..680216 (-) 1203 WP_025853783.1 GTP-binding protein -
  U6C02_RS03520 (U6C02_03520) - 680330..680494 (+) 165 WP_370648487.1 molybdopterin dinucleotide binding domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=931486 U6C02_RS03480 WP_003156588.1 675636..676073(+) (nucA/comI) [Bacillus velezensis strain YM-3]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=931486 U6C02_RS03480 WP_003156588.1 675636..676073(+) (nucA/comI) [Bacillus velezensis strain YM-3]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641