Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | R8612_RS05995 | Genome accession | NZ_AP028351 |
| Coordinates | 1174456..1174836 (-) | Length | 126 a.a. |
| NCBI ID | WP_002776373.1 | Uniprot ID | A0ABN0ERI9 |
| Organism | Campylobacter coli strain BCH-10460 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1169456..1179836
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8612_RS05970 (B10460_11740) | aspS | 1169969..1171720 (+) | 1752 | WP_002784258.1 | aspartate--tRNA ligase | - |
| R8612_RS05975 (B10460_11750) | - | 1171717..1172292 (+) | 576 | WP_002776379.1 | adenylate kinase | - |
| R8612_RS05980 (B10460_11760) | ppa | 1172302..1172820 (+) | 519 | WP_002776378.1 | inorganic diphosphatase | - |
| R8612_RS05985 (B10460_11770) | msrA | 1172868..1173368 (+) | 501 | WP_002776375.1 | peptide-methionine (S)-S-oxide reductase MsrA | - |
| R8612_RS05990 (B10460_11780) | - | 1173591..1174445 (-) | 855 | WP_370300696.1 | RsmB/NOP family class I SAM-dependent RNA methyltransferase | - |
| R8612_RS05995 (B10460_11790) | dprB | 1174456..1174836 (-) | 381 | WP_002776373.1 | Holliday junction resolvase RuvX | Machinery gene |
| R8612_RS06000 (B10460_11800) | dprA | 1174833..1175603 (-) | 771 | WP_002776372.1 | DNA-processing protein DprA | Machinery gene |
| R8612_RS06005 (B10460_11810) | - | 1175593..1176645 (-) | 1053 | WP_002776371.1 | divergent polysaccharide deacetylase family protein | - |
| R8612_RS06010 (B10460_11820) | ilvC | 1176648..1177670 (-) | 1023 | WP_002776360.1 | ketol-acid reductoisomerase | - |
| R8612_RS06015 (B10460_11830) | - | 1177793..1179727 (+) | 1935 | WP_052784744.1 | ribonuclease R family protein | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13949.38 Da Isoelectric Point: 9.5520
>NTDB_id=93145 R8612_RS05995 WP_002776373.1 1174456..1174836(-) (dprB) [Campylobacter coli strain BCH-10460]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI
Nucleotide
Download Length: 381 bp
>NTDB_id=93145 R8612_RS05995 WP_002776373.1 1174456..1174836(-) (dprB) [Campylobacter coli strain BCH-10460]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
42.063 |
100 |
0.421 |