Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V2I11_RS12005 Genome accession   NZ_CP143783
Coordinates   2492352..2493119 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain JSZ06     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2487352..2498119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2I11_RS11985 - 2487554..2488366 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  V2I11_RS11990 ccpN 2488392..2489030 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  V2I11_RS11995 glyS 2489131..2491170 (-) 2040 WP_032873973.1 glycine--tRNA ligase subunit beta -
  V2I11_RS12000 glyQ 2491163..2492050 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  V2I11_RS12005 recO 2492352..2493119 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  V2I11_RS12010 - 2493156..2493299 (-) 144 WP_007408286.1 YqzL family protein -
  V2I11_RS12015 era 2493455..2494360 (-) 906 WP_007408285.1 GTPase Era -
  V2I11_RS12020 - 2494341..2494751 (-) 411 WP_003152976.1 cytidine deaminase -
  V2I11_RS12025 - 2494875..2495249 (-) 375 WP_015240233.1 diacylglycerol kinase family protein -
  V2I11_RS12030 ybeY 2495230..2495703 (-) 474 WP_032873971.1 rRNA maturation RNase YbeY -
  V2I11_RS12035 - 2495704..2497836 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=931410 V2I11_RS12005 WP_007408287.1 2492352..2493119(-) (recO) [Bacillus velezensis strain JSZ06]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=931410 V2I11_RS12005 WP_007408287.1 2492352..2493119(-) (recO) [Bacillus velezensis strain JSZ06]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89