Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   MWM01_RS03955 Genome accession   NZ_AP025623
Coordinates   763349..765163 (+) Length   604 a.a.
NCBI ID   WP_244404659.1    Uniprot ID   -
Organism   Saccharococcus caldoxylosilyticus strain KH1-5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 758349..770163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM01_RS03935 (PcaKH15_07160) - 758753..759421 (-) 669 WP_244404816.1 TerC family protein -
  MWM01_RS03940 (PcaKH15_07170) mecA 759635..760321 (+) 687 WP_042411078.1 adaptor protein MecA -
  MWM01_RS03945 (PcaKH15_07180) cls 760409..761917 (+) 1509 WP_042411079.1 cardiolipin synthase -
  MWM01_RS03950 (PcaKH15_07190) - 762017..763267 (+) 1251 WP_244404817.1 competence protein CoiA -
  MWM01_RS03955 (PcaKH15_07200) pepF 763349..765163 (+) 1815 WP_244404659.1 oligoendopeptidase F Regulator
  MWM01_RS03960 (PcaKH15_07210) - 765186..765383 (-) 198 WP_017436307.1 hypothetical protein -
  MWM01_RS03965 (PcaKH15_07220) spxH 765698..766591 (-) 894 WP_017436306.1 ClpXP adapter protein SpxH -
  MWM01_RS03970 (PcaKH15_07230) - 766584..766997 (-) 414 WP_017436305.1 globin -
  MWM01_RS03975 (PcaKH15_07240) - 767138..767731 (-) 594 WP_017436304.1 lytic transglycosylase domain-containing protein -
  MWM01_RS03980 (PcaKH15_07250) - 767734..768321 (-) 588 WP_042411085.1 CYTH domain-containing protein -
  MWM01_RS03985 (PcaKH15_07260) - 768452..768826 (+) 375 WP_017436302.1 hypothetical protein -
  MWM01_RS03990 (PcaKH15_07270) - 768844..769482 (+) 639 WP_017436301.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 70027.95 Da        Isoelectric Point: 4.9223

>NTDB_id=93138 MWM01_RS03955 WP_244404659.1 763349..765163(+) (pepF) [Saccharococcus caldoxylosilyticus strain KH1-5]
MEAKQTKKSLPSRSEIPVEETWRLEDIFPTDEAWEQEFQEVKKMIPKLAEYQGRLGESADVLYEALQYQDEVSMRLGKLY
TYAHMRYDQDTTNAFYQGLNDRATSLYSEASSAMAFIVPEILSIDEAKLRSFLEEKQELKLYEHALDEINRQRPHVLSAE
EEALLAQAAEVMQSSSSTFSMLNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFKAVYDTYEKYKNTFAST
LSGAVKKDNFFARVRRYKSAREAALSSNNIPESVYDNLIETVHEHLPLLHRYIRLRKKVLGLDELHMYDLYTPLVQDVKM
EVTYEEAKEYMLKGLAPLGEEYISIVKEGLENRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFGHS
VHSYYTRKTQPYPYGDYSIFVAEVASTCNEALLSDYLLKTIDNEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHMIHMKAQ
EGEALTADSLTSLYYELNKKYFGDDIVVDQEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIEFL
KAGSSDYPIEVLKKAGVDMTSTEPIRQACQVFAEKLEEMEKLLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=93138 MWM01_RS03955 WP_244404659.1 763349..765163(+) (pepF) [Saccharococcus caldoxylosilyticus strain KH1-5]
ATGGAAGCGAAACAAACGAAAAAATCGCTGCCGTCACGCAGCGAAATTCCTGTCGAGGAAACGTGGCGTTTAGAGGATAT
TTTCCCAACGGACGAAGCGTGGGAGCAAGAATTTCAAGAAGTGAAAAAAATGATTCCGAAATTAGCGGAGTACCAAGGCC
GATTAGGAGAATCGGCGGATGTGCTGTACGAAGCGCTCCAATACCAGGACGAAGTGTCCATGCGCCTTGGCAAGCTGTAT
ACATATGCACATATGCGCTACGACCAAGATACAACAAACGCTTTTTACCAAGGTCTTAACGATCGAGCAACAAGCTTGTA
CAGCGAAGCGTCGAGTGCAATGGCGTTTATCGTTCCGGAAATTTTATCGATCGATGAGGCAAAATTGCGTTCGTTTTTAG
AAGAGAAACAAGAATTGAAACTGTATGAACATGCGTTAGACGAAATTAACCGCCAGCGTCCGCACGTGCTATCGGCAGAG
GAAGAGGCGCTGCTTGCCCAAGCGGCAGAGGTGATGCAATCGTCTTCGTCTACTTTTAGCATGCTGAATAATGCCGATTT
AACGTTCCCGACGATTATTGACGAAAATGGAGAAGAAGTGGAAGTGACGCACGGCCGCTTTATCCGCTTTTTAGAAAGCA
CGGACCGACGCGTGCGCCGTGATGCGTTTAAAGCCGTGTACGATACGTATGAAAAATATAAAAATACGTTTGCCAGCACG
TTAAGCGGAGCGGTGAAAAAAGATAACTTCTTTGCGCGCGTCCGCCGCTACAAATCGGCACGGGAAGCGGCATTAAGCAG
CAACAATATTCCGGAAAGTGTCTACGATAATTTGATTGAAACGGTCCATGAGCATCTGCCGCTGTTGCACCGCTATATCC
GCCTGCGCAAAAAAGTGCTTGGACTTGATGAGCTTCATATGTATGATCTATACACGCCGCTTGTTCAAGACGTGAAAATG
GAAGTCACGTATGAAGAAGCGAAAGAGTACATGTTAAAAGGACTTGCTCCGCTCGGTGAAGAATATATTAGCATCGTCAA
AGAAGGTCTTGAAAATCGCTGGGTCGATGTGCGCGAAAATAAAGGAAAACGGAGCGGCGCCTATTCGTCAGGGGCATATG
GCACCCATCCGTATATTTTGCTAAACTGGCAGGATAACGTGAATAATTTATTTACGTTAGTTCACGAATTTGGCCACTCT
GTGCATAGTTATTACACACGCAAAACGCAGCCGTATCCATATGGAGATTATTCCATTTTTGTCGCTGAGGTCGCGTCGAC
ATGCAATGAAGCGCTGTTAAGTGATTATTTATTAAAAACGATCGACAATGAGAAAAAACGATTATATTTGCTTAACCATT
ATTTAGAAGGGTTCCGCGGAACGGTTTTTCGGCAAACGATGTTTGCTGAGTTTGAACATATGATCCATATGAAAGCGCAG
GAAGGAGAGGCGCTGACTGCTGATTCATTGACTTCTCTCTATTATGAATTAAATAAAAAATATTTTGGCGATGACATTGT
CGTTGATCAGGAAATTGGCTTAGAGTGGGCGCGCATTCCGCATTTTTATTACAATTATTATGTGTATCAATATGCCACGG
GTTTCAGCGCCGCGACGGCATTAAGCAAACAAATACTTGAAGAAGGAGAGCCGGCGGTGAAGCGCTATATTGAATTTTTG
AAGGCGGGAAGCTCCGATTATCCGATTGAAGTGTTGAAAAAAGCCGGGGTAGATATGACGAGCACGGAACCGATTCGTCA
AGCATGCCAAGTGTTTGCGGAGAAACTGGAGGAAATGGAAAAGCTGTTATCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.351

98.013

0.503

Multiple sequence alignment