Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V1578_RS10990 Genome accession   NZ_CP143771
Coordinates   2333597..2334223 (+) Length   208 a.a.
NCBI ID   WP_013097255.1    Uniprot ID   A0A427KI93
Organism   Enterobacter cloacae strain ECC-003     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2328597..2339223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1578_RS10970 (V1578_10960) - 2328997..2330757 (-) 1761 WP_013097259.1 Lon protease family protein -
  V1578_RS10975 (V1578_10965) matP 2330944..2331396 (+) 453 WP_013097258.1 macrodomain Ter protein MatP -
  V1578_RS10980 (V1578_10970) ompA 2331460..2332515 (-) 1056 WP_014883252.1 porin OmpA -
  V1578_RS10985 (V1578_10975) sulA 2332870..2333379 (-) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  V1578_RS10990 (V1578_10980) sxy/tfoX 2333597..2334223 (+) 627 WP_013097255.1 TfoX/Sxy family DNA transformation protein Regulator
  V1578_RS10995 (V1578_10985) yccS 2334180..2336342 (-) 2163 WP_108453616.1 YccS family putative transporter -
  V1578_RS11000 (V1578_10990) - 2336362..2336808 (-) 447 WP_013097253.1 YccF domain-containing protein -
  V1578_RS11005 (V1578_10995) helD 2336931..2338985 (+) 2055 WP_194500771.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24000.57 Da        Isoelectric Point: 9.2254

>NTDB_id=931330 V1578_RS10990 WP_013097255.1 2333597..2334223(+) (sxy/tfoX) [Enterobacter cloacae strain ECC-003]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=931330 V1578_RS10990 WP_013097255.1 2333597..2334223(+) (sxy/tfoX) [Enterobacter cloacae strain ECC-003]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAGGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCGAAGTACTGTGTAAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGCGGCCGGCCGATCCTTCTCAAC
TATTATCGTGTGGATGACGGTCTTTGGCAGGACAGGGAGCGGCTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATACAACGCTACCAGCGAAACCGGCTTAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTGCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTTGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAAAAT
AAAGCGCTCAGTATCAAAGTACTGTTTGCCCTGGAAGGGGCGATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAAAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427KI93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567