Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8612_RS03020 Genome accession   NZ_AP028351
Coordinates   609776..610270 (-) Length   164 a.a.
NCBI ID   WP_002786475.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10460     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 604776..615270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8612_RS03005 (B10460_05920) metE 605397..607661 (-) 2265 WP_002777360.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R8612_RS03010 (B10460_05930) - 607684..608454 (-) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8612_RS03015 (B10460_05940) - 608468..609460 (-) 993 WP_002829553.1 isopenicillin N synthase family oxygenase -
  R8612_RS03020 (B10460_05950) luxS 609776..610270 (-) 495 WP_002786475.1 S-ribosylhomocysteine lyase Regulator
  R8612_RS03025 (B10460_05960) gatB 610385..611802 (+) 1418 Protein_592 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8612_RS03030 (B10460_05980) - 611802..612701 (+) 900 WP_317647464.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8612_RS03035 (B10460_05990) - 612710..613891 (+) 1182 WP_002786473.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.19 Da        Isoelectric Point: 5.0135

>NTDB_id=93130 R8612_RS03020 WP_002786475.1 609776..610270(-) (luxS) [Campylobacter coli strain BCH-10460]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEASMKDILNVSDQSQIPELNIYQCGTCAMHSLDEAKEIAQKVLNSTIGIMNNEELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=93130 R8612_RS03020 WP_002786475.1 609776..610270(-) (luxS) [Campylobacter coli strain BCH-10460]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCGCCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCACACCTGATGAAAAAAGTGTTGCTAAAGCTTGGGAAGCCTC
AATGAAAGATATTTTAAATGTGAGCGATCAAAGTCAAATTCCTGAACTCAATATCTATCAATGTGGAACTTGTGCTATGC
ATTCTTTGGATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTACCATAGGCATAATGAACAACGAAGAATTAAAA
CTTGAAAATATCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

71.429

98.171

0.701