Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V1576_RS10875 Genome accession   NZ_CP143746
Coordinates   2331842..2332468 (+) Length   208 a.a.
NCBI ID   WP_013097255.1    Uniprot ID   A0A427KI93
Organism   Enterobacter cloacae subsp. dissolvens strain ECC-068     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2326842..2337468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1576_RS10855 (V1576_10850) - 2327244..2329004 (-) 1761 WP_014831315.1 Lon protease family protein -
  V1576_RS10860 (V1576_10855) matP 2329191..2329643 (+) 453 WP_013097258.1 macrodomain Ter protein MatP -
  V1576_RS10865 (V1576_10860) ompA 2329708..2330760 (-) 1053 WP_014831316.1 porin OmpA -
  V1576_RS10870 (V1576_10865) sulA 2331115..2331624 (-) 510 WP_095455501.1 SOS-induced cell division inhibitor SulA -
  V1576_RS10875 (V1576_10870) sxy/tfoX 2331842..2332468 (+) 627 WP_013097255.1 TfoX/Sxy family DNA transformation protein Regulator
  V1576_RS10880 (V1576_10875) yccS 2332425..2334587 (-) 2163 WP_014831317.1 YccS family putative transporter -
  V1576_RS10885 (V1576_10880) - 2334607..2335053 (-) 447 WP_395280461.1 YccF domain-containing protein -
  V1576_RS10890 (V1576_10885) helD 2335176..2337230 (+) 2055 WP_395280462.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24000.57 Da        Isoelectric Point: 9.2254

>NTDB_id=931154 V1576_RS10875 WP_013097255.1 2331842..2332468(+) (sxy/tfoX) [Enterobacter cloacae subsp. dissolvens strain ECC-068]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=931154 V1576_RS10875 WP_013097255.1 2331842..2332468(+) (sxy/tfoX) [Enterobacter cloacae subsp. dissolvens strain ECC-068]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAAGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCGAAGTACTGTGTCAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGCGGCCGTCCGATCCTGCTTAAC
TACTATCGTGTGGATGACGGACTCTGGCAGGACCGGGAGCGGTTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATACAGCGCTACCAGCGAAACCGGCTTAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTCCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAAAAT
AAAGCGCTCAGTATTAAAGTACTGTTTGCCCTGGAAGGGGCTATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAAAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427KI93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567