Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   V1572_RS00280 Genome accession   NZ_CP143745
Coordinates   48291..49724 (+) Length   477 a.a.
NCBI ID   WP_045910109.1    Uniprot ID   -
Organism   Enterobacter quasiroggenkampii strain ECC-072     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 43291..54724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1572_RS00250 (V1572_00245) - 43858..44835 (+) 978 WP_045334591.1 calcium/sodium antiporter -
  V1572_RS00255 (V1572_00250) kdsD 44849..45835 (+) 987 WP_008501450.1 arabinose-5-phosphate isomerase KdsD -
  V1572_RS00260 (V1572_00255) kdsC 45850..46416 (+) 567 WP_008501449.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  V1572_RS00265 (V1572_00260) lptC 46413..46988 (+) 576 WP_024906353.1 LPS export ABC transporter periplasmic protein LptC -
  V1572_RS00270 (V1572_00265) lptA 46957..47511 (+) 555 WP_020883526.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  V1572_RS00275 (V1572_00270) lptB 47518..48243 (+) 726 WP_008501446.1 LPS export ABC transporter ATP-binding protein -
  V1572_RS00280 (V1572_00275) rpoN/rpoN1 48291..49724 (+) 1434 WP_045910109.1 RNA polymerase factor sigma-54 Machinery gene
  V1572_RS00285 (V1572_00280) hpf 49747..50034 (+) 288 WP_013098943.1 ribosome hibernation promoting factor -
  V1572_RS00290 (V1572_00285) ptsN 50117..50608 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  V1572_RS00295 (V1572_00290) rapZ 50654..51508 (+) 855 WP_045910110.1 RNase adapter RapZ -
  V1572_RS00300 (V1572_00295) npr 51505..51777 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  V1572_RS00305 (V1572_00300) mtgA 51819..52544 (-) 726 WP_048225123.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  V1572_RS00310 (V1572_00305) elbB 52541..53194 (-) 654 WP_262796720.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54116.87 Da        Isoelectric Point: 4.3080

>NTDB_id=931122 V1572_RS00280 WP_045910109.1 48291..49724(+) (rpoN/rpoN1) [Enterobacter quasiroggenkampii strain ECC-072]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDDEIELEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARVIISDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKNNGRWVVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=931122 V1572_RS00280 WP_045910109.1 48291..49724(+) (rpoN/rpoN1) [Enterobacter quasiroggenkampii strain ECC-072]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAACCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACCCAGCAATCGCAGGATACAGAAGCGCTCGATACCGCGGATGCACTCGAACAAAAAGAGATGCCCGAC
GAGCTTCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGACGA
TGAGCTACCGGTCTATCAGGGAGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTGGAACTCACCCCCTTCT
CCGATACCGACCGCGCGATTGCCACGTCAATTGTCGATGCCGTTGACGACACCGGCTATTTGACCGTCACGCTGGACGAT
ATTCTGGAAAGCATGGGCGACGACGAGATTGAGCTTGAGGAAGTTGAAGCCGTTCTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTAGCCGCAAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCATGGCTCG
ACGAGGCGCGCGTAATCATCAGCGATCATCTTGATCTGCTGGCGAACCACGATTTCCGCACCCTGATGCGCGTCACGCGC
CTGAAAGAAGAGGTGCTGAAAGAAGCGGTGAATCTGATCCAGTCGCTCGATCCGCGCCCCGGTCAGTCGATCCAGACCAG
CGAACCCGAGTACGTGATCCCGGATGTGCTGGTCAGAAAAAATAACGGCCGCTGGGTCGTTGAACTGAACTCTGACAGTA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGTGCGTAACGACTCCGACAATCAGTATATTCGT
AGCAATTTGCAGGAAGCGCGATGGCTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTACGCGTCAGCCGCTGCAT
TGTGGAACAGCAGCAGGCGTTCTTTGAGCAGGGTGAAGAGTATATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTGAATACCGAGGGCGGCGGCGAAGCGTCGTCCACGGCCATTCGCGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCGCTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48