Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   MWM14_RS14700 Genome accession   NZ_AP025621
Coordinates   2913213..2915027 (-) Length   604 a.a.
NCBI ID   WP_003252325.1    Uniprot ID   A0AB38R177
Organism   Parageobacillus thermoglucosidasius strain BH4-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2908213..2920027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM14_RS14665 (PthBH41_28750) - 2908992..2909624 (-) 633 WP_003252309.1 GTP pyrophosphokinase family protein -
  MWM14_RS14670 (PthBH41_28760) - 2909641..2910015 (-) 375 WP_003252310.1 hypothetical protein -
  MWM14_RS14675 (PthBH41_28770) - 2910145..2910735 (+) 591 WP_003252313.1 CYTH domain-containing protein -
  MWM14_RS14680 (PthBH41_28780) - 2910735..2911337 (+) 603 WP_003252315.1 lytic transglycosylase domain-containing protein -
  MWM14_RS14685 (PthBH41_28790) - 2911443..2911856 (+) 414 WP_013401443.1 globin -
  MWM14_RS14690 (PthBH41_28800) spxH 2911849..2912742 (+) 894 WP_003252320.1 ClpXP adapter protein SpxH -
  MWM14_RS14695 (PthBH41_28820) - 2912998..2913192 (+) 195 WP_003252322.1 hypothetical protein -
  MWM14_RS14700 (PthBH41_28830) pepF 2913213..2915027 (-) 1815 WP_003252325.1 oligoendopeptidase F Regulator
  MWM14_RS14705 (PthBH41_28840) - 2915109..2916362 (-) 1254 WP_244410578.1 competence protein CoiA family protein -
  MWM14_RS14710 (PthBH41_28850) cls 2916464..2917972 (-) 1509 WP_003252328.1 cardiolipin synthase -
  MWM14_RS14715 (PthBH41_28860) mecA 2918051..2918728 (-) 678 WP_003252330.1 adaptor protein MecA -
  MWM14_RS14720 (PthBH41_28870) - 2918944..2919615 (+) 672 WP_003252331.1 TerC family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 70159.31 Da        Isoelectric Point: 5.0109

>NTDB_id=93107 MWM14_RS14700 WP_003252325.1 2913213..2915027(-) (pepF) [Parageobacillus thermoglucosidasius strain BH4-1]
MDEKKTKKSLPLRSEIPVEETWRLEDIFPTDEAWEQEFQEVKKMIPKLSDYQGRLGESADTLYEALQYQDKISMRLGKLY
TYAHMRYDQDTTNAFYQGLNDRATSLYSEASSAMAFIVPEILAIDEAKLRAFLEEKKELKLYEHALDEINRQRPHVLSAE
EEAILAQAAEVMQASSTTFGMLNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFKAVYETYEKYKNTFAST
LAGAVKKDNFFARVRRYKSAREAALSNNNIPESVYDNLIETIHEHLPLLHRYVRLRKKVLGLDELHMYDLYTPLVQDVKM
EVTYEEAKEYMLKGLAPLGDEYIRIVKEGLENRWVDVRENKGKRSGAYSSGAYGTNPYILLNWQDNVNNLFTLVHEFGHS
VHSYYTRKTQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNYYLEGFRGTVFRQTMFAEFEHMIHIKAQ
EGEALTADSLTSMYYELNKKYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSRQILEEGEPAVKRYIEFL
KAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLEEMEQLLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=93107 MWM14_RS14700 WP_003252325.1 2913213..2915027(-) (pepF) [Parageobacillus thermoglucosidasius strain BH4-1]
ATGGATGAAAAGAAAACAAAAAAATCGTTACCATTGCGAAGTGAAATTCCTGTTGAAGAAACGTGGCGTTTAGAGGACAT
TTTCCCAACGGATGAAGCATGGGAGCAAGAATTTCAAGAAGTGAAAAAAATGATTCCGAAATTATCGGATTATCAAGGAA
GGCTGGGGGAATCGGCAGATACGTTATACGAAGCGCTGCAATACCAAGATAAGATATCCATGCGTCTTGGCAAGCTGTAT
ACATATGCGCATATGCGCTATGACCAAGATACGACCAACGCTTTTTATCAAGGGTTGAACGATCGAGCGACAAGCCTTTA
CAGCGAAGCGTCAAGCGCGATGGCATTTATCGTGCCGGAAATTTTGGCGATCGATGAGGCGAAATTGCGTGCGTTTTTAG
AAGAGAAAAAAGAATTAAAGCTGTATGAACACGCTTTAGATGAAATTAACCGCCAGCGCCCGCATGTGTTGTCCGCCGAA
GAAGAGGCGATTCTGGCCCAAGCGGCAGAAGTCATGCAAGCATCTTCGACGACATTCGGCATGCTGAATAACGCCGATTT
AACGTTCCCGACGATTATCGATGAAAATGGGGAAGAAGTGGAAGTAACGCATGGCCGTTTTATTCGCTTTTTGGAAAGCA
CGGACCGCCGCGTGCGGCGCGATGCGTTTAAAGCGGTATATGAGACGTACGAAAAGTATAAAAACACATTTGCCAGCACG
CTCGCCGGCGCGGTGAAAAAAGATAACTTTTTCGCGCGCGTCCGCCGCTATAAATCGGCGCGGGAAGCGGCGTTAAGCAA
TAATAACATCCCTGAAAGTGTATACGATAATTTGATTGAAACGATTCATGAACATTTGCCGCTGTTGCACCGCTACGTTC
GTTTGCGCAAAAAAGTGCTTGGGCTTGACGAATTACACATGTATGATTTATACACCCCGCTTGTGCAAGATGTGAAAATG
GAAGTAACGTATGAAGAAGCGAAAGAATACATGTTAAAAGGGCTTGCTCCGCTCGGCGACGAATATATTCGCATCGTCAA
GGAAGGCCTGGAAAACCGCTGGGTTGACGTGCGCGAAAACAAGGGAAAACGAAGCGGTGCTTATTCGTCAGGAGCGTACG
GAACAAATCCGTATATTTTGCTTAATTGGCAAGATAACGTCAATAATTTGTTTACACTGGTCCACGAATTCGGCCATTCT
GTGCATAGCTATTACACGCGCAAAACGCAGCCGTATCCGTATGGGAATTATTCGATTTTTGTCGCTGAAGTTGCATCGAC
ATGCAACGAAGCGCTGTTAAATGATTATTTATTAAAAACGATCGATGACGAGAAAAAACGATTATATTTGCTTAACTATT
ATTTGGAAGGGTTCCGCGGAACGGTCTTCCGCCAAACGATGTTTGCCGAGTTTGAACATATGATTCATATTAAGGCACAG
GAAGGCGAAGCGCTTACAGCGGATTCATTGACTTCCATGTATTACGAATTAAACAAAAAATATTTTGGCGATGATATTGT
TGTCGATAAGGAAATCGGATTAGAATGGGCGCGTATTCCGCATTTTTACTACAACTATTATGTTTATCAATACGCAACCG
GCTTTAGCGCGGCGACCGCATTAAGCAGACAAATATTAGAAGAAGGGGAGCCGGCCGTGAAGCGCTATATCGAGTTTTTA
AAAGCAGGCAGCTCCGACTATCCGATTGAAGTGTTGAAAAAAGCGGGAGTGGATATGACGAGCGCGGAGCCGATCCGCCA
GGCTTGCCAAGTATTCGCAGAAAAACTGGAAGAAATGGAACAGCTATTGTCGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.931

97.848

0.498

Multiple sequence alignment