Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V1602_RS10960 Genome accession   NZ_CP143739
Coordinates   2311453..2312079 (+) Length   208 a.a.
NCBI ID   WP_048999389.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain ECC-090     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2306453..2317079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1602_RS10940 (V1602_10920) - 2306854..2308614 (-) 1761 WP_048999388.1 Lon protease family protein -
  V1602_RS10945 (V1602_10925) matP 2308800..2309252 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  V1602_RS10950 (V1602_10930) ompA 2309316..2310371 (-) 1056 WP_108780329.1 porin OmpA -
  V1602_RS10955 (V1602_10935) sulA 2310726..2311235 (-) 510 WP_193066732.1 SOS-induced cell division inhibitor SulA -
  V1602_RS10960 (V1602_10940) sxy/tfoX 2311453..2312079 (+) 627 WP_048999389.1 TfoX/Sxy family DNA transformation protein Regulator
  V1602_RS10965 (V1602_10945) yccS 2312036..2314198 (-) 2163 WP_045261705.1 YccS family putative transporter -
  V1602_RS10970 (V1602_10950) - 2314218..2314664 (-) 447 WP_028012605.1 YccF domain-containing protein -
  V1602_RS10975 (V1602_10955) helD 2314788..2316842 (+) 2055 WP_045261704.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23955.54 Da        Isoelectric Point: 9.2151

>NTDB_id=931067 V1602_RS10960 WP_048999389.1 2311453..2312079(+) (sxy/tfoX) [Enterobacter bugandensis strain ECC-090]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSEGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSTFALNAARKERYQRHQRNRLKDLPNLTFQLEVLLVEAGITNEETLRALGARESWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=931067 V1602_RS10960 WP_048999389.1 2311453..2312079(+) (sxy/tfoX) [Enterobacter bugandensis strain ECC-090]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTGTCACCACTGGGTGAAATTCATCATCGCGCGCT
GTTCGGCGGCTATACCCTGGCAGTGGATGATGCGGTTTTTGCCATGGTGTCAGAAGGTGAGCTCTACCTCCGTGCCTGTG
AAGAAAGTGCGAAATACTGTGTGAAAAATGCCGCGTCTTTTTTGACCCTGATGAAGCGGGGCCGTCCGGTGCTTCTCAAC
TATTACCGGGTGGATGACGGGCTATGGCAGGACAGGGAGCGTCTGCTTCAGCTCTCCACTTTCGCACTTAATGCGGCAAG
AAAAGAGCGTTACCAGCGGCATCAGCGCAATCGACTTAAGGACCTGCCAAACCTGACCTTTCAGCTGGAAGTGTTGCTCG
TTGAAGCGGGCATCACCAACGAAGAAACGCTGCGGGCGCTTGGCGCAAGGGAGAGCTGGCTGAAGATGCGGGCGAAAAAT
AAAGCGCTGAGTATCAAAGTGCTATTCGCGCTGGAAGGGGCGATCGAGGGGCTGCATGAGGCGGCACTCCCGGCCGGCAT
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.635

97.596

0.562