Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R8561_RS08110 Genome accession   NZ_AP028350
Coordinates   1577397..1578902 (-) Length   501 a.a.
NCBI ID   WP_002778536.1    Uniprot ID   A0ABP2NPV3
Organism   Campylobacter coli strain BCH-10420     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1572397..1583902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8561_RS08080 (B10420_15880) - 1572630..1573370 (-) 741 WP_002778542.1 TerC family protein -
  R8561_RS08085 (B10420_15890) - 1573511..1574227 (+) 717 WP_002778541.1 ankyrin repeat domain-containing protein -
  R8561_RS08090 - 1574394..1574639 (+) 246 WP_002830356.1 hypothetical protein -
  R8561_RS08095 (B10420_15910) purN 1574777..1575352 (-) 576 WP_002778539.1 phosphoribosylglycinamide formyltransferase -
  R8561_RS08100 (B10420_15920) - 1575343..1576713 (-) 1371 WP_002783577.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  R8561_RS08105 (B10420_15930) - 1576697..1577395 (-) 699 WP_002778537.1 NYN domain-containing protein -
  R8561_RS08110 (B10420_15940) comM 1577397..1578902 (-) 1506 WP_002778536.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R8561_RS08115 (B10420_15950) def 1578899..1579426 (-) 528 WP_002778535.1 peptide deformylase -
  R8561_RS08120 (B10420_15960) clpP 1579454..1580038 (-) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  R8561_RS08125 (B10420_15970) tig 1580038..1581372 (-) 1335 WP_023890360.1 trigger factor -
  R8561_RS08130 (B10420_15980) folE 1581493..1582065 (+) 573 WP_002778530.1 GTP cyclohydrolase I FolE -
  R8561_RS08135 (B10420_15990) fliI 1582065..1583396 (+) 1332 WP_023890361.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56608.64 Da        Isoelectric Point: 8.7459

>NTDB_id=93106 R8561_RS08110 WP_002778536.1 1577397..1578902(-) (comM) [Campylobacter coli strain BCH-10420]
MKKLKCVSFDENLDIIDVESTFTRGLPNLSIVGLANIAIKESIERIKATLLTCNFSFPAKKITINLSPSGIPKKGSHFDL
VIATLILLQNEDFDDFFVVGELGLDGSIKSTNELFSLLLFLSTKVKSAKVVVPKNIALKASMIPNLEIYGLEHLNEVIEF
FKEKNYEKFKFTQSHPLFANPLIIENEIFIKNHHFELDFKDIKGQEKAKRACLIAALGMHNILFEGSPGSGKSMCAKRLV
EIMPPQSLNEVLMQNAYMSLNSKDCEFTQKRALRHPHHTSTRASIFGGGAKNAKIGEIALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKTTYETKFSFVAAQNPCPCGNLFSKNLSCVCSENEIKRYKNHISAPIMDRIDLYVAMDEISK
DDKSSINSKEMSERILKAFIFGKKRGQKEFNGKLNDTELQKFCILEKDAKDTLDLAISRYNLSQRALNKILKVSRSIADF
EEKELLSKNHILEALSFRMRS

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=93106 R8561_RS08110 WP_002778536.1 1577397..1578902(-) (comM) [Campylobacter coli strain BCH-10420]
ATGAAAAAATTAAAATGTGTAAGCTTTGATGAGAATTTAGATATCATCGATGTAGAGTCTACATTTACAAGAGGCTTACC
TAATTTAAGCATAGTCGGACTTGCAAATATTGCAATTAAAGAAAGTATCGAGCGTATCAAAGCCACACTTTTAACTTGCA
ATTTTTCATTTCCTGCTAAAAAAATCACCATCAATCTTAGCCCTTCAGGAATTCCAAAAAAAGGTTCTCATTTTGATTTA
GTTATCGCTACGCTTATATTGTTACAAAATGAAGACTTTGATGATTTTTTTGTGGTAGGCGAGCTTGGTCTTGATGGAAG
TATCAAAAGCACCAATGAGCTTTTTTCTTTACTTTTATTTTTATCCACAAAGGTAAAAAGTGCAAAAGTTGTAGTCCCAA
AAAATATAGCTCTAAAAGCTTCTATGATACCCAATCTAGAAATTTATGGACTTGAGCATTTAAATGAAGTGATTGAATTT
TTTAAAGAAAAAAACTATGAGAAATTCAAATTCACCCAAAGCCATCCTTTATTTGCAAATCCTTTGATTATAGAAAATGA
AATTTTTATTAAAAATCATCATTTTGAACTTGATTTTAAAGATATCAAAGGACAAGAAAAAGCTAAAAGAGCTTGTTTGA
TAGCAGCACTAGGTATGCACAATATACTTTTTGAAGGAAGTCCAGGAAGTGGCAAAAGTATGTGTGCAAAACGCCTTGTT
GAAATCATGCCTCCACAAAGTTTAAATGAGGTTTTAATGCAAAATGCTTATATGTCTTTAAATTCTAAAGATTGCGAATT
TACGCAAAAAAGAGCCTTAAGACACCCTCATCATACCTCTACAAGAGCTAGTATTTTTGGTGGTGGAGCAAAAAATGCGA
AGATAGGTGAAATCGCTCTAGCTAATGGTGGAGTTTTATTTTTTGATGAATTTCCTCATTTTAACAAACAGATTATCGAA
AGTCTAAGAGAACCTCTAGAAGATCATAAAATTCATATTTCAAGAGTCAATTCAAAAACCACTTATGAAACCAAATTCAG
TTTTGTTGCCGCTCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTGTCTTGCGTTTGCAGTGAAAATGAGA
TTAAAAGATATAAAAATCACATTTCAGCCCCTATTATGGATAGAATTGATCTTTATGTAGCTATGGATGAGATCAGCAAA
GATGATAAGTCAAGTATAAATTCAAAAGAAATGAGTGAAAGAATTTTAAAGGCTTTTATCTTTGGCAAAAAACGCGGCCA
AAAAGAATTTAATGGCAAATTAAACGATACAGAATTGCAAAAATTTTGTATTTTAGAAAAAGATGCCAAGGATACTTTGG
ATTTAGCCATTTCGCGTTATAATCTTTCACAAAGAGCTTTAAATAAAATTTTAAAAGTTTCAAGATCTATTGCAGATTTT
GAAGAAAAAGAACTTCTTAGTAAAAATCATATTTTAGAAGCTTTGAGTTTTAGGATGAGGAGTTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Subunit ChlI of Mg-chelatase (ChlI)

(18-135)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

46.293

99.601

0.461