Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V1608_RS11250 Genome accession   NZ_CP143738
Coordinates   2370599..2371225 (+) Length   208 a.a.
NCBI ID   WP_032639334.1    Uniprot ID   -
Organism   Enterobacter chengduensis strain ECC-093     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2365599..2376225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1608_RS11230 (V1608_11205) - 2365998..2367758 (-) 1761 WP_032639324.1 Lon protease family protein -
  V1608_RS11235 (V1608_11210) matP 2367945..2368397 (+) 453 WP_032639326.1 macrodomain Ter protein MatP -
  V1608_RS11240 (V1608_11215) ompA 2368462..2369517 (-) 1056 WP_120286683.1 porin OmpA -
  V1608_RS11245 (V1608_11220) sulA 2369872..2370381 (-) 510 WP_032639331.1 SOS-induced cell division inhibitor SulA -
  V1608_RS11250 (V1608_11225) sxy/tfoX 2370599..2371225 (+) 627 WP_032639334.1 TfoX/Sxy family DNA transformation protein Regulator
  V1608_RS11255 (V1608_11230) yccS 2371182..2373344 (-) 2163 WP_032639336.1 YccS family putative transporter -
  V1608_RS11260 (V1608_11235) - 2373364..2373810 (-) 447 WP_032639339.1 YccF domain-containing protein -
  V1608_RS11265 (V1608_11240) helD 2373934..2375988 (+) 2055 WP_032639341.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23946.53 Da        Isoelectric Point: 9.4215

>NTDB_id=931044 V1608_RS11250 WP_032639334.1 2370599..2371225(+) (sxy/tfoX) [Enterobacter chengduensis strain ECC-093]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQIEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENYSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=931044 V1608_RS11250 WP_032639334.1 2370599..2371225(+) (sxy/tfoX) [Enterobacter chengduensis strain ECC-093]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCACTTGGCGAGATCCATCATCGCGCGCT
GTTTGGAGGCTACACCCTGGCGGTGGATGATGCCGTCTTTGCCATGGTGTCTGATGGCGAACTTTATCTTCGGGCCTGTG
AGGAGAGTGCAAAATACTGTGTCAAAAATGCCTCTTCATTTTTAACGCTGATGAAGCGAGGCCGCCCGGTGCTGCTTAAC
TATTACCGCGTGGATGAGGGATTATGGCAGGACAGGGAGCGGTTGCTCCAGCTCTCTTCCTTTGCGCTCAGCGCGGCAAG
AAAAGAGCGCTATCAGCGCCATCAGCGTAACCGACTAAAAGATCTGCCAAACCTGACCTTTCAGATTGAGGTCTTGCTCT
TTGAAGCAGGCATCACCAATGAAGAAACGCTGCGGGCGCTGGGGGCCAGAGCGAGCTGGCTAAAGATGCGGGCAAAAAAT
AAAGCGCTCAGCATCAAGGTTCTCTTTGCGCTTGAGGGGGCAATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGCAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAACTACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567