Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACB332_RS06365 Genome accession   NZ_CP167016
Coordinates   1273077..1273685 (+) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain Isolate 10     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1268077..1278685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB332_RS06335 (ACB332_06335) - 1268342..1268824 (+) 483 WP_002988938.1 S-ribosylhomocysteine lyase -
  ACB332_RS06340 (ACB332_06340) - 1268969..1270423 (-) 1455 WP_076639416.1 cell division site-positioning protein MapZ family protein -
  ACB332_RS06345 (ACB332_06345) - 1270437..1271591 (-) 1155 WP_076639417.1 class I SAM-dependent RNA methyltransferase -
  ACB332_RS06355 (ACB332_06355) gpsB 1272036..1272362 (-) 327 WP_002983626.1 cell division regulator GpsB -
  ACB332_RS06360 (ACB332_06360) - 1272481..1272996 (-) 516 WP_002994217.1 DUF1273 domain-containing protein -
  ACB332_RS06365 (ACB332_06365) recU 1273077..1273685 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  ACB332_RS06370 (ACB332_06370) pbp1a 1273672..1275837 (+) 2166 WP_076639418.1 penicillin-binding protein PBP1A -
  ACB332_RS06375 (ACB332_06375) pepC 1276304..1277641 (-) 1338 WP_002983616.1 aminopeptidase C -
  ACB332_RS06380 (ACB332_06380) nadE 1277826..1278650 (-) 825 WP_010922552.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=931027 ACB332_RS06365 WP_002983622.1 1273077..1273685(+) (recU) [Streptococcus pyogenes strain Isolate 10]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=931027 ACB332_RS06365 WP_002983622.1 1273077..1273685(+) (recU) [Streptococcus pyogenes strain Isolate 10]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAGCGCAGTCGGGCAAAAATCGTTGAAGCATACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5