Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MWM14_RS05960 Genome accession   NZ_AP025621
Coordinates   1166922..1168643 (+) Length   573 a.a.
NCBI ID   WP_003249272.1    Uniprot ID   -
Organism   Parageobacillus thermoglucosidasius strain BH4-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1161922..1173643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM14_RS05935 (PthBH41_11340) - 1162325..1162558 (+) 234 WP_003249261.1 exodeoxyribonuclease VII small subunit -
  MWM14_RS05940 (PthBH41_11350) - 1162562..1163455 (+) 894 WP_042383522.1 polyprenyl synthetase family protein -
  MWM14_RS05945 (PthBH41_11360) dxs 1163672..1165564 (+) 1893 WP_003249266.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MWM14_RS05950 (PthBH41_11370) - 1165568..1166398 (+) 831 WP_244411013.1 TlyA family RNA methyltransferase -
  MWM14_RS05955 (PthBH41_11380) argR 1166453..1166902 (+) 450 WP_003249270.1 transcriptional regulator ArgR -
  MWM14_RS05960 (PthBH41_11390) recN 1166922..1168643 (+) 1722 WP_003249272.1 DNA repair protein RecN Machinery gene
  MWM14_RS05965 (PthBH41_11400) spoIVB 1168771..1170063 (+) 1293 WP_185215408.1 SpoIVB peptidase -
  MWM14_RS05970 (PthBH41_11410) spo0A 1170378..1171157 (+) 780 WP_003249276.1 sporulation transcription factor Spo0A -
  MWM14_RS05975 (PthBH41_11420) - 1171318..1172299 (+) 982 Protein_1132 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64639.75 Da        Isoelectric Point: 4.8156

>NTDB_id=93097 MWM14_RS05960 WP_003249272.1 1166922..1168643(+) (recN) [Parageobacillus thermoglucosidasius strain BH4-1]
MLAELSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRGSAEFVRYGEEKAEIEGLFLLDNENHPCYDK
CAEVGIDISEGMVVLRREIFANGKSVCRVNGKLVTTAILRDIGSTLVDIHGQHEHQELMDPSRHLPLLDEYGGAEIAAAL
EEYRAVYEKYEQLRKKLKKLNENEQQMAHRLDLLTFQLDEIQKANLQVNEDEQLMEEKVKIMNFQKIYEALKHSYEALSG
EHRGLDWIGLAMSHLEDVTSISPALKEAYETIANSYYLLEDITYKLSDELEQLEYDPARLDFIESRLSEINQLKRKYGAT
IEEILQYAEKIAEEIDELQHRETHIHELQKELKSVTEDLLIEAKNVTNVRQKYAKMLINHIHQELKDLYMEKTQFDIVFT
KREGTLDAPLLDGVPVNFHEDGVDEVEFYISTNVGEPLKPLAKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRVSIGSQVLCISHLPQVAAMADTHLFIAKETDGNRTRTSVKTLSDEEKVKEIGRMISGVEITELTKQH
AKELLELAAKIKG

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=93097 MWM14_RS05960 WP_003249272.1 1166922..1168643(+) (recN) [Parageobacillus thermoglucosidasius strain BH4-1]
TTGCTTGCGGAATTATCCATAAAAAATTTTGCGATTATTGAATCGTTGTCGGTTTCGTTTGACAAAGGGCTGACCGTGCT
GACCGGGGAAACGGGAGCGGGGAAGTCGATTATTATTGACGCCATCCAGCTGCTGATCGGCGGGCGCGGTTCGGCGGAGT
TTGTCCGCTATGGGGAAGAAAAGGCGGAAATAGAAGGGCTTTTTTTATTGGATAATGAAAACCATCCATGCTATGACAAA
TGTGCGGAAGTCGGCATCGATATTAGCGAAGGCATGGTTGTTTTGCGTCGCGAAATTTTCGCGAATGGAAAAAGCGTGTG
CCGCGTCAATGGAAAATTAGTGACAACAGCGATATTGCGCGATATCGGTTCAACGCTTGTCGATATTCACGGCCAGCATG
AACACCAGGAATTGATGGATCCGTCGCGCCATCTTCCGCTGCTCGATGAATATGGGGGAGCGGAAATTGCCGCCGCGCTG
GAAGAATACCGGGCTGTTTATGAGAAATATGAGCAATTGCGGAAGAAATTGAAAAAGCTGAATGAAAATGAGCAGCAAAT
GGCCCATCGCCTTGATTTATTAACATTTCAGCTCGATGAAATTCAAAAAGCAAATTTGCAAGTAAACGAAGATGAACAAC
TAATGGAAGAAAAAGTAAAAATTATGAACTTCCAAAAAATTTATGAGGCGCTTAAACATAGCTATGAGGCGTTATCCGGT
GAACACCGCGGGCTTGACTGGATTGGTCTGGCCATGAGCCATTTAGAAGATGTCACCTCTATCAGCCCGGCATTGAAAGA
AGCGTACGAAACGATTGCGAATAGTTATTATTTATTAGAGGATATTACGTATAAATTGAGCGATGAACTTGAACAATTAG
AGTATGACCCGGCTCGCCTCGATTTTATTGAAAGCCGTCTTAGCGAAATTAATCAGTTAAAACGGAAATACGGAGCGACC
ATCGAAGAGATTTTGCAATATGCTGAAAAAATTGCGGAAGAAATCGATGAACTCCAACATCGCGAAACCCATATCCATGA
ACTGCAAAAAGAATTGAAATCGGTGACGGAAGATTTATTAATCGAAGCGAAAAACGTGACGAACGTCCGCCAAAAATACG
CAAAAATGTTAATTAACCATATTCATCAAGAATTAAAAGATCTATACATGGAAAAAACGCAATTTGATATCGTATTTACG
AAAAGAGAAGGAACGCTCGATGCGCCGCTGCTGGACGGCGTGCCTGTGAATTTTCATGAAGATGGCGTCGATGAGGTGGA
ATTTTACATTTCTACCAACGTGGGCGAACCGTTAAAACCGCTGGCGAAAATTGCTTCCGGCGGCGAATTGTCACGCATTA
TGCTCGCGTTAAAAAGCATATTTTCGAAACATCAAGGCGTTACGTCCATTATTTTTGATGAAGTCGATACAGGCGTCAGC
GGCCGGGTTGCGCAGGCGATTGCTGAAAAAATTTACCGCGTCTCGATTGGCTCGCAAGTGCTTTGTATTTCCCATTTGCC
GCAAGTAGCGGCGATGGCGGATACGCATTTGTTTATTGCAAAGGAAACGGACGGAAATCGGACAAGAACATCAGTAAAAA
CATTATCGGACGAAGAAAAAGTAAAAGAAATCGGCCGAATGATTTCCGGGGTGGAAATTACAGAACTAACAAAGCAACAT
GCAAAAGAGCTGCTGGAGCTAGCGGCAAAAATCAAAGGATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.937

100

0.64

Multiple sequence alignment