Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MWM14_RS05730 Genome accession   NZ_AP025621
Coordinates   1126749..1127045 (+) Length   98 a.a.
NCBI ID   WP_003249184.1    Uniprot ID   -
Organism   Parageobacillus thermoglucosidasius strain BH4-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1121749..1132045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM14_RS05705 (PthBH41_10860) - 1122123..1123256 (+) 1134 WP_003249175.1 SAM-dependent methyltransferase -
  MWM14_RS05710 (PthBH41_10870) - 1123307..1123549 (-) 243 WP_003249178.1 DUF2626 family protein -
  MWM14_RS05715 (PthBH41_10880) - 1123749..1124447 (-) 699 WP_003249180.1 helix-turn-helix domain-containing protein -
  MWM14_RS05720 (PthBH41_10890) comGA 1124648..1125712 (+) 1065 WP_003249181.1 competence type IV pilus ATPase ComGA Machinery gene
  MWM14_RS05725 (PthBH41_10900) comGB 1125705..1126736 (+) 1032 WP_003249183.1 competence type IV pilus assembly protein ComGB -
  MWM14_RS05730 (PthBH41_10910) comGC 1126749..1127045 (+) 297 WP_003249184.1 competence type IV pilus major pilin ComGC Machinery gene
  MWM14_RS05735 (PthBH41_10920) comGD 1127029..1127472 (+) 444 WP_003249186.1 competence type IV pilus minor pilin ComGD -
  MWM14_RS05740 (PthBH41_10930) comGE 1127456..1127779 (+) 324 WP_003249188.1 competence type IV pilus minor pilin ComGE -
  MWM14_RS05745 (PthBH41_10940) comGF 1127776..1128201 (+) 426 WP_003249190.1 competence type IV pilus minor pilin ComGF -
  MWM14_RS05750 (PthBH41_10950) comGG 1128218..1128607 (+) 390 WP_003249192.1 competence type IV pilus minor pilin ComGG -
  MWM14_RS05755 (PthBH41_10960) - 1128873..1129052 (+) 180 WP_003249195.1 YqzE family protein -
  MWM14_RS05760 (PthBH41_10970) - 1129110..1129901 (-) 792 WP_003249197.1 YqhG family protein -
  MWM14_RS05765 (PthBH41_10980) - 1129888..1131555 (-) 1668 WP_244410996.1 SNF2-related protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10930.83 Da        Isoelectric Point: 7.1327

>NTDB_id=93096 MWM14_RS05730 WP_003249184.1 1126749..1127045(+) (comGC) [Parageobacillus thermoglucosidasius strain BH4-1]
MNEKAFTLIEMLIVLMVISVLLLIVIPNITKHNGMINNKGCEAFVNTVQAQVKAYEMEHNKIPTIQELINEKYIKSDQCP
NGRKIQISSDGKVSESGA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=93096 MWM14_RS05730 WP_003249184.1 1126749..1127045(+) (comGC) [Parageobacillus thermoglucosidasius strain BH4-1]
ATGAATGAAAAAGCGTTCACATTGATTGAAATGTTGATCGTGCTAATGGTTATTTCTGTTTTATTGCTTATCGTCATTCC
GAATATCACGAAACATAATGGAATGATTAATAATAAAGGCTGCGAAGCGTTCGTAAACACCGTGCAAGCTCAAGTAAAGG
CATATGAAATGGAACATAACAAAATTCCGACGATACAGGAGCTCATCAACGAAAAGTATATTAAGTCCGATCAGTGCCCA
AACGGACGTAAAATTCAAATCAGCAGCGACGGGAAAGTAAGTGAAAGCGGTGCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

54.945

92.857

0.51
  comGC Staphylococcus aureus MW2

45.745

95.918

0.439
  comGC Staphylococcus aureus N315

45.745

95.918

0.439

Multiple sequence alignment