Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8561_RS06090 Genome accession   NZ_AP028350
Coordinates   1181318..1181812 (+) Length   164 a.a.
NCBI ID   WP_002807365.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10420     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1176318..1186812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8561_RS06075 (B10420_11920) - 1177696..1178877 (-) 1182 WP_023890235.1 metal-dependent hydrolase -
  R8561_RS06080 (B10420_11930) - 1178886..1179785 (-) 900 WP_002807362.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8561_RS06085 (B10420_11940) gatB 1179785..1181203 (-) 1419 WP_023890236.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8561_RS06090 (B10420_11950) luxS 1181318..1181812 (+) 495 WP_002807365.1 S-ribosylhomocysteine lyase Regulator
  R8561_RS06095 (B10420_11960) - 1182129..1183121 (+) 993 WP_002807373.1 isopenicillin N synthase family oxygenase -
  R8561_RS06100 (B10420_11970) - 1183135..1183905 (+) 771 WP_023890237.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8561_RS06105 (B10420_11980) metE 1183928..1186192 (+) 2265 WP_023890238.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18314.25 Da        Isoelectric Point: 6.3290

>NTDB_id=93087 R8561_RS06090 WP_002807365.1 1181318..1181812(+) (luxS) [Campylobacter coli strain BCH-10420]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEASMKDVLNVSDQNKIPELNIYQCGTCAMHSLNEAKEIAQKVLNSSIGVMNNKELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=93087 R8561_RS06090 WP_002807365.1 1181318..1181812(+) (luxS) [Campylobacter coli strain BCH-10420]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCACCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCACACCGGATGAAAAAAGTGTTGCTAAAGCTTGGGAAGCCTC
AATGAAAGATGTTTTAAATGTAAGCGATCAAAACAAAATTCCTGAACTCAATATCTATCAATGCGGAACTTGTGCTATGC
ATTCCTTAAATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTAGTATAGGTGTGATGAATAATAAAGAATTAAAA
CTTGAAAATATTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment