Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V1565_RS02170 Genome accession   NZ_CP143691
Coordinates   449529..451049 (+) Length   506 a.a.
NCBI ID   WP_395312521.1    Uniprot ID   -
Organism   Enterobacter hormaechei subsp. xiangfangensis strain ECC-181     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 444529..456049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1565_RS02145 (V1565_02145) ilvE 446096..447025 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  V1565_RS02150 (V1565_02150) ilvM 447044..447307 (-) 264 WP_045346813.1 acetolactate synthase 2 small subunit -
  V1565_RS02155 (V1565_02155) ilvG 447304..448950 (-) 1647 WP_096947242.1 acetolactate synthase 2 catalytic subunit -
  V1565_RS02160 (V1565_02160) ilvX 448953..449003 (-) 51 WP_192930497.1 peptide IlvX -
  V1565_RS02165 (V1565_02165) ilvL 449090..449188 (-) 99 WP_001311244.1 ilv operon leader peptide -
  V1565_RS02170 (V1565_02170) comM 449529..451049 (+) 1521 WP_395312521.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V1565_RS02175 (V1565_02175) - 451078..451416 (-) 339 WP_006808641.1 DUF413 domain-containing protein -
  V1565_RS02180 (V1565_02180) hdfR 451535..452356 (+) 822 WP_003860190.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54779.72 Da        Isoelectric Point: 7.3360

>NTDB_id=930683 V1565_RS02170 WP_395312521.1 449529..451049(+) (comM) [Enterobacter hormaechei subsp. xiangfangensis strain ECC-181]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRMRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTPGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVAPDSPEDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRALDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGIKG
ESSATVRERVIAAQARQYVRQNRLNARLDNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=930683 V1565_RS02170 WP_395312521.1 449529..451049(+) (comM) [Enterobacter hormaechei subsp. xiangfangensis strain ECC-181]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATCGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCAGAAACGACCGTTAAAGAGGCGAGGGATCGCATGCGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATCAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAATACGCCAGGGCTAAGCTCGTGCGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGGGGCGTTCCCGGTGCAATATCGGGTGCGCTTGAAGCCATACGTGCGGGAA
GACAAATCATTGTAGCTAATGAAAACGCCTCTGAAGTAAGCCTTATCGCCGAAAAGGGGTGTCTTGTCGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGACGAGGTAGCGCCAGATTCGCC
CGAGGATCTCAGCGATATTATGGGTCAGGAACAGGGTAAACGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGATTGAACGGCCTGTTGCCACCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCTACGTCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCTCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGTTCGATCCCCGGTCCGGGTGAAATCTCACTGGCGC
ACAACGGCATTCTCTTCCTGGATGAATTGCCAGAGTTTGAACGCCGAGCGCTGGATGCATTGCGGGAGCCGATTGAATCC
GGCGAAATCCATCTGTCTCGTACACGGGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCCGCGATGAACCCTAG
CCCTACGGGTCATTATCAGGGCAATCATAACCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGAGTAAGCTGTCCGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCCCCGCCCGGTCTGCTGAGGCAAACCGGTATCAAAGGC
GAAAGCTCAGCAACAGTGCGTGAACGGGTTATTGCGGCACAGGCGCGGCAGTATGTTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACAGCGGGATCCGACAGTTTTGTTCTCTCAACGCTGAAGATGCGGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTTGCGCGCACGGTCGCCGACGTGGAGGGCTGCCCCGGAATA
GAGAGGCGGCATTTGCAGGAGGCATTAAGTTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.926

100

0.585
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio campbellii strain DS40M4

57.738

99.605

0.575
  comM Vibrio cholerae strain A1552

57.968

99.209

0.575
  comM Legionella pneumophila str. Paris

48.893

98.221

0.48
  comM Legionella pneumophila strain ERS1305867

48.893

98.221

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

100

0.437