Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V1580_RS10835 Genome accession   NZ_CP143687
Coordinates   2278094..2278720 (+) Length   208 a.a.
NCBI ID   WP_041910603.1    Uniprot ID   A0A8E1RPS6
Organism   Enterobacter bugandensis strain ECC-190     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2273094..2283720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1580_RS10815 (V1580_10800) - 2273495..2275255 (-) 1761 WP_395278411.1 AAA family ATPase -
  V1580_RS10820 (V1580_10805) matP 2275441..2275893 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  V1580_RS10825 (V1580_10810) ompA 2275957..2277012 (-) 1056 WP_108780329.1 porin OmpA -
  V1580_RS10830 (V1580_10815) sulA 2277367..2277876 (-) 510 WP_041910604.1 SOS-induced cell division inhibitor SulA -
  V1580_RS10835 (V1580_10820) sxy/tfoX 2278094..2278720 (+) 627 WP_041910603.1 TfoX/Sxy family DNA transformation protein Regulator
  V1580_RS10840 (V1580_10825) yccS 2278677..2280839 (-) 2163 WP_395278412.1 YccS family putative transporter -
  V1580_RS10845 (V1580_10830) - 2280859..2281305 (-) 447 WP_395278413.1 YccF domain-containing protein -
  V1580_RS10850 (V1580_10835) helD 2281429..2283483 (+) 2055 WP_395278414.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.61 Da        Isoelectric Point: 9.2151

>NTDB_id=930647 V1580_RS10835 WP_041910603.1 2278094..2278720(+) (sxy/tfoX) [Enterobacter bugandensis strain ECC-190]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSEGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSTFALNAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARESWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPLENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=930647 V1580_RS10835 WP_041910603.1 2278094..2278720(+) (sxy/tfoX) [Enterobacter bugandensis strain ECC-190]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTGTCACCTCTGGGTGAAATTCATCATCGCGCGCT
GTTCGGCGGCTATACCCTGGCAGTGGATGATGCGGTTTTTGCCATGGTGTCAGAAGGTGAGCTCTACCTCCGTGCCTGTG
AAGAAAGTGCGAAATACTGTGTGAAAAATGCCGCGTCTTTTTTGACCCTGATGAAGCGGGGCCGTCCGGTGCTTCTCAAC
TATTACCGGGTGGATGACGGGCTATGGCAGGACAGGGAGCGTCTGCTTCAGCTCTCCACTTTCGCACTTAATGCGGCAAG
AAAAGAGCGTTACCAGCGGCATCAGCGCAATCGACTTAAGGACCTGCCAAACCTGACCTTTCAGCTGGAAGTGCTGCTCT
TTGAAGCGGGCATCACCAACGAAGAAACGCTGCGGGCGCTTGGCGCTAGGGAGAGCTGGCTGAAGATGCGGGCGAAAAAT
AAAGCGCTGAGTATCAAAGTGCTATTCGCGCTGGAAGGGGCGATCGAGGGGCTGCATGAGGCGGCACTCCCGGCCGGCAT
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACTGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.081

95.192

0.553