Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V1577_RS10810 Genome accession   NZ_CP143681
Coordinates   2296328..2296954 (+) Length   208 a.a.
NCBI ID   WP_059354518.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain ECC-209     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2291328..2301954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1577_RS10790 (V1577_10790) - 2291729..2293489 (-) 1761 WP_059354520.1 Lon protease family protein -
  V1577_RS10795 (V1577_10795) matP 2293675..2294127 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  V1577_RS10800 (V1577_10800) ompA 2294191..2295246 (-) 1056 WP_120279396.1 porin OmpA -
  V1577_RS10805 (V1577_10805) sulA 2295601..2296110 (-) 510 WP_062935843.1 SOS-induced cell division inhibitor SulA -
  V1577_RS10810 (V1577_10810) sxy/tfoX 2296328..2296954 (+) 627 WP_059354518.1 TfoX/Sxy family DNA transformation protein Regulator
  V1577_RS10815 (V1577_10815) yccS 2296911..2299073 (-) 2163 WP_333043235.1 YccS family putative transporter -
  V1577_RS10820 (V1577_10820) - 2299093..2299539 (-) 447 WP_041910601.1 YccF domain-containing protein -
  V1577_RS10825 (V1577_10825) helD 2299663..2301717 (+) 2055 WP_059354516.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23930.57 Da        Isoelectric Point: 9.4588

>NTDB_id=930602 V1577_RS10810 WP_059354518.1 2296328..2296954(+) (sxy/tfoX) [Enterobacter bugandensis strain ECC-209]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSEGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSTFALNAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNAETLRALGARESWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPLENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=930602 V1577_RS10810 WP_059354518.1 2296328..2296954(+) (sxy/tfoX) [Enterobacter bugandensis strain ECC-209]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTGTCACCGCTGGGTGAAATTCATCATCGCGCGCT
GTTCGGCGGCTATACCCTGGCAGTGGATGATGCGGTTTTTGCCATGGTGTCAGAAGGTGAGCTCTACCTCCGTGCCTGTG
AAGAAAGTGCGAAATACTGTGTGAAAAATGCCGCTTCTTTTTTGACCCTGATGAAGCGGGGTCGTCCGGTGCTTCTCAAC
TATTACCGGGTGGATGACGGGCTATGGCAGGACAGGGAGCGTCTGCTCCAGCTCTCCACTTTCGCACTTAATGCGGCAAG
AAAAGAGCGTTACCAGCGGCATCAGCGCAATCGACTTAAGGACCTGCCAAACCTGACCTTTCAGCTGGAAGTGTTGCTCT
TTGAAGCGGGCATCACCAACGCAGAAACGCTGCGGGCGCTTGGCGCAAGGGAGAGCTGGCTGAAGATGCGGGCGAAAAAT
AAAGCGCTGAGTATCAAAGTGCTATTCGCGCTGGAAGGGGCGATCGAGGGGCTGCATGAGGCGGCACTCCCGGCCGGCAT
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACTGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.081

95.192

0.553