Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V1607_RS11005 Genome accession   NZ_CP143676
Coordinates   2313917..2314543 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei subsp. xiangfangensis strain ECC-228     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2308917..2319543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1607_RS10985 (V1607_10990) - 2309316..2311076 (-) 1761 WP_017384808.1 Lon protease family protein -
  V1607_RS10990 (V1607_10995) matP 2311263..2311715 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  V1607_RS10995 (V1607_11000) ompA 2311781..2312833 (-) 1053 WP_108376575.1 porin OmpA -
  V1607_RS11000 (V1607_11005) sulA 2313190..2313699 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  V1607_RS11005 (V1607_11010) sxy/tfoX 2313917..2314543 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  V1607_RS11010 (V1607_11015) yccS 2314500..2316662 (-) 2163 WP_015570895.1 YccS family putative transporter -
  V1607_RS11015 (V1607_11020) - 2316681..2317127 (-) 447 WP_015570894.1 YccF domain-containing protein -
  V1607_RS11020 (V1607_11025) helD 2317250..2319304 (+) 2055 WP_280052743.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=930556 V1607_RS11005 WP_017384804.1 2313917..2314543(+) (sxy/tfoX) [Enterobacter hormaechei subsp. xiangfangensis strain ECC-228]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=930556 V1607_RS11005 WP_017384804.1 2313917..2314543(+) (sxy/tfoX) [Enterobacter hormaechei subsp. xiangfangensis strain ECC-228]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGTGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACACTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572