Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | SNM_RS10605 | Genome accession | NZ_AP025613 |
| Coordinates | 1939352..1939660 (+) | Length | 102 a.a. |
| NCBI ID | WP_024119555.1 | Uniprot ID | - |
| Organism | Thermus thermophilus strain SNM6-6 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1934352..1944660
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SNM_RS10575 (TthSNM66_20770) | - | 1935433..1935897 (+) | 465 | WP_011229049.1 | hypothetical protein | - |
| SNM_RS10580 (TthSNM66_20780) | pfkA | 1935874..1936842 (-) | 969 | WP_011173968.1 | 6-phosphofructokinase | - |
| SNM_RS10585 (TthSNM66_20790) | rsmI | 1936839..1937633 (-) | 795 | WP_244341015.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| SNM_RS10590 (TthSNM66_20800) | - | 1937635..1938129 (-) | 495 | WP_011173970.1 | hypothetical protein | - |
| SNM_RS10595 (TthSNM66_20810) | - | 1938193..1938720 (-) | 528 | WP_011173971.1 | inorganic diphosphatase | - |
| SNM_RS10600 (TthSNM66_20820) | - | 1938753..1939379 (+) | 627 | WP_011173972.1 | YcxB family protein | - |
| SNM_RS10605 (TthSNM66_20830) | comEA | 1939352..1939660 (+) | 309 | WP_024119555.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| SNM_RS10610 (TthSNM66_20840) | comA/comEC | 1939657..1941690 (+) | 2034 | WP_244341018.1 | DNA internalization-related competence protein ComEC/Rec2 | Machinery gene |
| SNM_RS10615 (TthSNM66_20850) | - | 1941678..1942487 (-) | 810 | WP_024119553.1 | ParB/RepB/Spo0J family partition protein | - |
| SNM_RS10620 (TthSNM66_20860) | soj | 1942471..1943220 (-) | 750 | WP_244346763.1 | chromosome-partitioning ATPase Soj | - |
| SNM_RS10625 (TthSNM66_20870) | rsmG | 1943214..1943963 (-) | 750 | WP_244346772.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
Sequence
Protein
Download Length: 102 a.a. Molecular weight: 10947.23 Da Isoelectric Point: 10.3435
>NTDB_id=93049 SNM_RS10605 WP_024119555.1 1939352..1939660(+) (comEA) [Thermus thermophilus strain SNM6-6]
MVLGYLLAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP
MVLGYLLAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP
Nucleotide
Download Length: 309 bp
>NTDB_id=93049 SNM_RS10605 WP_024119555.1 1939352..1939660(+) (comEA) [Thermus thermophilus strain SNM6-6]
CTGGTCCTCGGCTACCTCCTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAGGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTGGCCCGGCGCATCGTGGAGGGCAGGCCCTACGCCCGGGTGGAG
GACCTTCTCAAGGTGAAAGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA
CTGGTCCTCGGCTACCTCCTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAGGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTGGCCCGGCGCATCGTGGAGGGCAGGCCCTACGCCCGGGTGGAG
GACCTTCTCAAGGTGAAAGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Thermus thermophilus HB27 |
100 |
100 |
1 |
| comEA | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
39.815 |
100 |
0.422 |