Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V1587_RS10105 Genome accession   NZ_CP143660
Coordinates   2138349..2138975 (+) Length   208 a.a.
NCBI ID   WP_371898388.1    Uniprot ID   -
Organism   Enterobacter sp. ECC-249     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2133349..2143975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1587_RS10085 (V1587_10065) - 2133749..2135509 (-) 1761 WP_395314578.1 AAA family ATPase -
  V1587_RS10090 (V1587_10070) matP 2135696..2136148 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  V1587_RS10095 (V1587_10075) ompA 2136212..2137267 (-) 1056 WP_023311028.1 porin OmpA -
  V1587_RS10100 (V1587_10080) sulA 2137622..2138131 (-) 510 WP_371898548.1 SOS-induced cell division inhibitor SulA -
  V1587_RS10105 (V1587_10085) sxy/tfoX 2138349..2138975 (+) 627 WP_371898388.1 TfoX/Sxy family DNA transformation protein Regulator
  V1587_RS10110 (V1587_10090) yccS 2138932..2141094 (-) 2163 WP_371898386.1 YccS family putative transporter -
  V1587_RS10115 (V1587_10095) - 2141114..2141560 (-) 447 WP_371898385.1 YccF domain-containing protein -
  V1587_RS10120 (V1587_10100) helD 2141684..2143738 (+) 2055 WP_371898383.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23892.39 Da        Isoelectric Point: 9.2224

>NTDB_id=930467 V1587_RS10105 WP_371898388.1 2138349..2138975(+) (sxy/tfoX) [Enterobacter sp. ECC-249]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRANN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=930467 V1587_RS10105 WP_371898388.1 2138349..2138975(+) (sxy/tfoX) [Enterobacter sp. ECC-249]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCCCCGTTGGGCGAGATCCATCATCGCGCGCT
GTTTGGAGGCTACACCCTCGCGGTGGATGATGCGGTTTTTGCCATGGTTTCTGATGGCGAACTTTATCTTCGGGCCTGTG
AGGAGAGTGCAAAATACTGTGTAAAAAATGCCTCCTCTTTTTTGACGTTGATGAAGCGAGGTCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGATTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAGCGCTATCAGCGACATCAGCGAAACCGCCTTAAGGATCTGCCAAACCTAACCTTTCAGCTTGAGGTCTTGCTCT
TTGAAGCAGGCATAACCAACGAGGAAACGCTCCGGGCGCTGGGTGCCAGAGCGAGCTGGCTAAAGATGCGGGCAAACAAC
AAAGCGCTCAGTATTAAAGTTCTCTTCGCGCTGGAAGGGGCCATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGCAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567