Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1587_RS04325 Genome accession   NZ_CP143660
Coordinates   895880..896410 (+) Length   176 a.a.
NCBI ID   WP_023310055.1    Uniprot ID   A0A7W2V7Q4
Organism   Enterobacter sp. ECC-249     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 890880..901410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1587_RS04305 (V1587_04290) aphA 891203..891916 (+) 714 WP_045909173.1 acid phosphatase AphA -
  V1587_RS04310 (V1587_04295) - 892030..892446 (+) 417 WP_045909174.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  V1587_RS04315 (V1587_04300) - 892449..892802 (+) 354 WP_371899547.1 MmcQ/YjbR family DNA-binding protein -
  V1587_RS04320 (V1587_04305) uvrA 892806..895628 (-) 2823 WP_045328845.1 excinuclease ABC subunit UvrA -
  V1587_RS04325 (V1587_04310) ssb 895880..896410 (+) 531 WP_023310055.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V1587_RS04330 (V1587_04315) - 896473..896754 (-) 282 WP_008503385.1 YjcB family protein -
  V1587_RS04335 (V1587_04320) - 897400..898965 (+) 1566 WP_371899546.1 EAL domain-containing protein -
  V1587_RS04340 (V1587_04325) soxS 898972..899298 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  V1587_RS04345 (V1587_04330) soxR 899397..899855 (+) 459 WP_008503388.1 redox-sensitive transcriptional activator SoxR -
  V1587_RS04350 (V1587_04335) - 900223..900894 (+) 672 WP_395314514.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.81 Da        Isoelectric Point: 5.2456

>NTDB_id=930464 V1587_RS04325 WP_023310055.1 895880..896410(+) (ssb) [Enterobacter sp. ECC-249]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=930464 V1587_RS04325 WP_023310055.1 895880..896410(+) (ssb) [Enterobacter sp. ECC-249]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACGACTGAAGTAGTAGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCGGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2V7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364