Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8924_RS06270 Genome accession   NZ_AP028348
Coordinates   1212242..1212736 (+) Length   164 a.a.
NCBI ID   WP_002860433.1    Uniprot ID   Q5HTR6
Organism   Campylobacter jejuni strain BCH-10403     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207242..1217736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8924_RS06255 (B10403_12340) - 1208628..1209806 (-) 1179 WP_052804132.1 metal-dependent hydrolase -
  R8924_RS06260 (B10403_12350) gpsA 1209816..1210712 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8924_RS06265 (B10403_12360) gatB 1210709..1212127 (-) 1419 WP_002867377.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8924_RS06270 (B10403_12370) luxS 1212242..1212736 (+) 495 WP_002860433.1 S-ribosylhomocysteine lyase Regulator
  R8924_RS06275 (B10403_12380) - 1213049..1214041 (+) 993 WP_002908545.1 isopenicillin N synthase family dioxygenase -
  R8924_RS06280 (B10403_12390) - 1214052..1214822 (+) 771 WP_002884424.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8924_RS06285 (B10403_12400) metE 1214834..1217098 (+) 2265 WP_002908548.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18271.22 Da        Isoelectric Point: 6.3290

>NTDB_id=93043 R8924_RS06270 WP_002860433.1 1212242..1212736(+) (luxS) [Campylobacter jejuni strain BCH-10403]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=93043 R8924_RS06270 WP_002860433.1 1212242..1212736(+) (luxS) [Campylobacter jejuni strain BCH-10403]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HTR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment