Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V1586_RS11185 Genome accession   NZ_CP143650
Coordinates   2312575..2313201 (+) Length   208 a.a.
NCBI ID   WP_208283292.1    Uniprot ID   -
Organism   Enterobacter sichuanensis strain ECC-263     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2307575..2318201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1586_RS11165 (V1586_11140) - 2307976..2309736 (-) 1761 WP_395306663.1 AAA family ATPase -
  V1586_RS11170 (V1586_11145) matP 2309923..2310375 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  V1586_RS11175 (V1586_11150) ompA 2310438..2311493 (-) 1056 WP_025755977.1 porin OmpA -
  V1586_RS11180 (V1586_11155) sulA 2311848..2312357 (-) 510 WP_025755976.1 SOS-induced cell division inhibitor SulA -
  V1586_RS11185 (V1586_11160) sxy/tfoX 2312575..2313201 (+) 627 WP_208283292.1 TfoX/Sxy family DNA transformation protein Regulator
  V1586_RS11190 (V1586_11165) yccS 2313158..2315320 (-) 2163 WP_095440941.1 YccS family putative transporter -
  V1586_RS11195 (V1586_11170) - 2315340..2315786 (-) 447 WP_047958177.1 YccF domain-containing protein -
  V1586_RS11200 (V1586_11175) helD 2315909..2317963 (+) 2055 WP_059386450.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23845.40 Da        Isoelectric Point: 9.4681

>NTDB_id=930400 V1586_RS11185 WP_208283292.1 2312575..2313201(+) (sxy/tfoX) [Enterobacter sichuanensis strain ECC-263]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVMNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSYALSAARKERNQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIKGLHEAALPAGIRRELTEWFNALPEPQDNHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=930400 V1586_RS11185 WP_208283292.1 2312575..2313201(+) (sxy/tfoX) [Enterobacter sichuanensis strain ECC-263]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCCCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGTGCGCT
GTTTGGCGGTTACACCCTGGCGGTGGATGATGCGGTCTTTGCCATGGTGTCAGACGGCGAACTTTATCTTCGTGCGTGTG
AGGAAAGTGCAAAATACTGTGTAATGAATGCCGCCTCGTTTTTAACGCTGATGAAGCGTGGTCGTCCGGTACTGCTCAAC
TATTATCGTGTGGACGACGGCTTATGGCAGGACAGAGAGCGGCTGCTTCAGCTCTCCTCGTATGCCCTCAGTGCCGCAAG
AAAAGAGCGCAACCAGCGGCATCAACGAAACCGGCTTAAGGATCTGCCGAACCTGACTTTTCAGCTTGAAGTCCTGCTGT
TTGAAGCCGGTATCACCAATGAAGAGACACTCCGGGCGCTGGGTGCCAGAGCCAGCTGGCTGAAGATGCGGGCGAAAAAT
AAAGCGCTGAGTATAAAAGTGCTCTTCGCGCTGGAAGGGGCGATTAAGGGGCTGCATGAGGCGGCGCTCCCGGCAGGCAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTACCTGAGCCACAGGATAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.143

97.596

0.558