Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1586_RS04525 Genome accession   NZ_CP143650
Coordinates   929598..930122 (+) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter sichuanensis strain ECC-263     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 924598..935122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1586_RS04505 (V1586_04495) aphA 924921..925634 (+) 714 WP_025757841.1 acid phosphatase AphA -
  V1586_RS04510 (V1586_04500) - 925748..926164 (+) 417 WP_095441874.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  V1586_RS04515 (V1586_04505) - 926167..926520 (+) 354 WP_025757844.1 MmcQ/YjbR family DNA-binding protein -
  V1586_RS04520 (V1586_04510) uvrA 926524..929346 (-) 2823 WP_047957548.1 excinuclease ABC subunit UvrA -
  V1586_RS04525 (V1586_04515) ssb 929598..930122 (+) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V1586_RS04530 (V1586_04520) - 930239..930874 (+) 636 WP_047957549.1 hypothetical protein -
  V1586_RS04535 (V1586_04525) - 930936..931217 (-) 282 WP_025757848.1 YjcB family protein -
  V1586_RS04540 (V1586_04530) - 931706..933106 (+) 1401 WP_155030559.1 sensor domain-containing diguanylate cyclase -
  V1586_RS04545 (V1586_04535) - 933446..935011 (+) 1566 WP_025757851.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=930397 V1586_RS04525 WP_008503384.1 929598..930122(+) (ssb) [Enterobacter sichuanensis strain ECC-263]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=930397 V1586_RS04525 WP_008503384.1 929598..930122(+) (ssb) [Enterobacter sichuanensis strain ECC-263]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTGGTGGTTAACGTCGG
TGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGTGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGTCTGCGCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368