Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   MWM13_RS07665 Genome accession   NZ_AP025609
Coordinates   1442697..1443575 (+) Length   292 a.a.
NCBI ID   WP_244344967.1    Uniprot ID   -
Organism   Thermus thermophilus strain SNM3-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1437697..1448575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM13_RS07640 (TthSNM33_15130) - 1438695..1439186 (+) 492 WP_011173430.1 DUF5317 domain-containing protein -
  MWM13_RS07645 (TthSNM33_15140) - 1439241..1440245 (+) 1005 WP_244347537.1 homoisocitrate dehydrogenase -
  MWM13_RS07650 (TthSNM33_15150) pilM 1440380..1441513 (+) 1134 WP_244347538.1 type IV pilus assembly protein PilM Machinery gene
  MWM13_RS07655 (TthSNM33_15160) pilN 1441506..1442129 (+) 624 WP_011173433.1 competence protein Machinery gene
  MWM13_RS07660 (TthSNM33_15170) pilO 1442119..1442700 (+) 582 WP_011173434.1 type 4a pilus biogenesis protein PilO Machinery gene
  MWM13_RS07665 (TthSNM33_15180) pilW 1442697..1443575 (+) 879 WP_244344967.1 competence protein Machinery gene
  MWM13_RS07670 (TthSNM33_15190) pilQ 1443572..1445845 (+) 2274 WP_244347539.1 secretin N-terminal domain-containing protein Machinery gene
  MWM13_RS07675 (TthSNM33_15200) aroC 1445904..1447055 (+) 1152 WP_011228640.1 chorismate synthase -
  MWM13_RS07680 (TthSNM33_15210) - 1447080..1447634 (+) 555 WP_008632876.1 shikimate kinase -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 29863.40 Da        Isoelectric Point: 4.6515

>NTDB_id=93019 MWM13_RS07665 WP_244344967.1 1442697..1443575(+) (pilW) [Thermus thermophilus strain SNM3-3]
MKNAWQRLKEAWANLPRSTKLLLAALLLVGGVALWYVGLYLPAQVAEAPTPAPSTQVIEAPPIPPLASQEEAKPQAEAPA
QEEAQAPASSQEEAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPASASRPTPVPEGPAVRVQTPAPAPQAAPATRPIPG
TSGALPAPKILSPALSAPLPQARETPPRVAVPTALVEAPLPGPEEKGAEKAPTPASPLERLVAEKGLRLSGTLLGPVSVA
ILESKEGYLVVPVGSPIPGTEAVVRQVEEGSVTLALKEETLNLSLVQAGGGQ

Nucleotide


Download         Length: 879 bp        

>NTDB_id=93019 MWM13_RS07665 WP_244344967.1 1442697..1443575(+) (pilW) [Thermus thermophilus strain SNM3-3]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGCCAACCTGCCCAGGTCCACCAAGCTCCTCCTGGCGGCCCTCCT
TCTCGTGGGGGGCGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAGCGCCCACCCCGGCCCCCT
CCACGCAGGTCATCGAGGCTCCCCCGATCCCGCCCCTCGCCTCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
CAAGAGGAGGCCCAGGCGCCCGCTTCTTCCCAAGAGGAGGCCCAGGCGCCCCCGCCTGCCCCCGTGGCCCGGGCCGAGCC
CCCGCCCCCGAACCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCTCCGGCCTCCGCCTCCCGCCCCACGCCCG
TCCCCGAGGGGCCCGCCGTCCGGGTCCAGACCCCTGCCCCGGCCCCCCAGGCGGCCCCCGCCACCCGGCCCATCCCCGGG
ACCTCCGGCGCCCTCCCGGCGCCCAAGATCCTCTCCCCCGCGCTGTCCGCCCCCCTGCCCCAGGCCAGGGAGACGCCGCC
TAGGGTCGCCGTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAAGGGGGCGGAGAAGGCCCCCACCC
CGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGCCTCCGCCTCTCGGGGACCCTGCTCGGCCCCGTGAGCGTGGCC
ATCCTGGAGAGCAAGGAGGGCTACCTCGTGGTCCCTGTGGGAAGCCCCATCCCCGGCACGGAGGCCGTGGTGCGCCAGGT
GGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAACCTGTCCCTCGTCCAAGCTGGAGGTGGCCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

99.315

100

0.993

Multiple sequence alignment