Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   U4D54_RS08205 Genome accession   NZ_CP143639
Coordinates   1682321..1682833 (+) Length   170 a.a.
NCBI ID   WP_011276866.1    Uniprot ID   A0A5B2YXI2
Organism   Staphylococcus haemolyticus strain M81.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1677321..1687833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4D54_RS08175 (U4D54_08175) - 1678292..1679173 (+) 882 WP_011276872.1 mechanosensitive ion channel family protein -
  U4D54_RS08180 (U4D54_08180) - 1679195..1679398 (+) 204 WP_011276871.1 DUF951 domain-containing protein -
  U4D54_RS08185 (U4D54_08185) ychF 1679410..1680507 (+) 1098 WP_011276870.1 redox-regulated ATPase YchF -
  U4D54_RS08190 (U4D54_08190) - 1680649..1680840 (-) 192 WP_011276869.1 hypothetical protein -
  U4D54_RS08195 (U4D54_08195) - 1680906..1681712 (-) 807 WP_033079913.1 glycoside hydrolase family 25 protein -
  U4D54_RS08200 (U4D54_08200) rpsF 1682003..1682299 (+) 297 WP_011276867.1 30S ribosomal protein S6 -
  U4D54_RS08205 (U4D54_08205) ssbA 1682321..1682833 (+) 513 WP_011276866.1 single-stranded DNA-binding protein Machinery gene
  U4D54_RS08210 (U4D54_08210) rpsR 1682881..1683123 (+) 243 WP_002447994.1 30S ribosomal protein S18 -
  U4D54_RS08215 (U4D54_08215) - 1683246..1684926 (-) 1681 Protein_1592 IS1182 family transposase -
  U4D54_RS08220 (U4D54_08220) - 1685238..1686308 (-) 1071 WP_011276865.1 Ltp family lipoprotein -
  U4D54_RS08225 (U4D54_08225) - 1686511..1686768 (-) 258 WP_011276864.1 hypothetical protein -
  U4D54_RS08230 (U4D54_08230) - 1686984..1687733 (+) 750 Protein_1595 amidohydrolase family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18837.38 Da        Isoelectric Point: 4.7306

>NTDB_id=930181 U4D54_RS08205 WP_011276866.1 1682321..1682833(+) (ssbA) [Staphylococcus haemolyticus strain M81.1]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQSNNNDFQDYGQGFGGQQSGQNTSYNNNNSSNNKQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=930181 U4D54_RS08205 WP_011276866.1 1682321..1682833(+) (ssbA) [Staphylococcus haemolyticus strain M81.1]
ATGATAAACAGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTCATCAATGTTGTTGTAT
TTAGAAGACAAGCAGAGAATGTGAATAATTATTTATTCAAAGGTAGTCTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTAGCAGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCTCAAGGTGGCCAACGTAATCAAAGTAATAACAATGATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAACAATCAG
GACAAAATACATCTTACAATAACAATAATTCATCAAATAATAAACAATCTGATAATCCATTTGCAAACGCAAACGGACCG
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.659
  ssb Latilactobacillus sakei subsp. sakei 23K

54.07

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376