Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACB340_RS07220 Genome accession   NZ_CP167005
Coordinates   1415041..1415649 (+) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain Isolate 27     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1410041..1420649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB340_RS07190 (ACB340_07190) - 1410287..1410769 (+) 483 WP_023079245.1 S-ribosylhomocysteine lyase -
  ACB340_RS07195 (ACB340_07195) - 1410915..1412384 (-) 1470 WP_023079255.1 cell division site-positioning protein MapZ family protein -
  ACB340_RS07200 (ACB340_07200) - 1412398..1413552 (-) 1155 WP_023079247.1 class I SAM-dependent RNA methyltransferase -
  ACB340_RS07210 (ACB340_07210) gpsB 1413997..1414323 (-) 327 WP_002983626.1 cell division regulator GpsB -
  ACB340_RS07215 (ACB340_07215) - 1414445..1414960 (-) 516 WP_011285056.1 DUF1273 domain-containing protein -
  ACB340_RS07220 (ACB340_07220) recU 1415041..1415649 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  ACB340_RS07225 (ACB340_07225) pbp1a 1415636..1417801 (+) 2166 WP_023079282.1 penicillin-binding protein PBP1A -
  ACB340_RS07230 (ACB340_07230) pepC 1418268..1419605 (-) 1338 WP_002983616.1 aminopeptidase C -
  ACB340_RS07235 (ACB340_07235) nadE 1419790..1420614 (-) 825 WP_109991552.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=930090 ACB340_RS07220 WP_002983622.1 1415041..1415649(+) (recU) [Streptococcus pyogenes strain Isolate 27]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=930090 ACB340_RS07220 WP_002983622.1 1415041..1415649(+) (recU) [Streptococcus pyogenes strain Isolate 27]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGCCGGGCAAAAATCGTTGAAGCGTACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5