Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   VP472_RS18245 Genome accession   NZ_CP143632
Coordinates   3670563..3671708 (+) Length   381 a.a.
NCBI ID   WP_077722992.1    Uniprot ID   -
Organism   Bacillus sp. MT(2024)     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3665563..3676708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP472_RS18225 (VP472_18225) - 3666037..3666753 (-) 717 WP_014306017.1 Crp/Fnr family transcriptional regulator -
  VP472_RS18230 (VP472_18230) narK 3666851..3668041 (-) 1191 WP_146275724.1 nitrate transporter NarK -
  VP472_RS18235 (VP472_18235) argS 3668176..3669846 (-) 1671 WP_043020956.1 arginine--tRNA ligase -
  VP472_RS18240 (VP472_18240) - 3669843..3670271 (-) 429 WP_003151069.1 DUF1934 family protein -
  VP472_RS18245 (VP472_18245) rapF 3670563..3671708 (+) 1146 WP_077722992.1 tetratricopeptide repeat protein Regulator
  VP472_RS18250 (VP472_18250) phrF 3671692..3671811 (+) 120 WP_069473622.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  VP472_RS18255 (VP472_18255) - 3672010..3672213 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  VP472_RS18260 (VP472_18260) - 3672227..3672430 (+) 204 WP_146275728.1 hypothetical protein -
  VP472_RS18265 (VP472_18265) - 3672465..3672710 (+) 246 Protein_3536 DUF4177 domain-containing protein -
  VP472_RS18270 (VP472_18270) - 3672837..3673118 (+) 282 WP_014306021.1 hypothetical protein -
  VP472_RS18275 (VP472_18275) - 3673162..3673674 (+) 513 WP_070082524.1 stage II sporulation protein M -
  VP472_RS18280 (VP472_18280) - 3674265..3674483 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  VP472_RS18285 (VP472_18285) speB 3674653..3675525 (-) 873 WP_003151054.1 agmatinase -
  VP472_RS18290 (VP472_18290) speE 3675585..3676415 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45541.70 Da        Isoelectric Point: 4.6057

>NTDB_id=930068 VP472_RS18245 WP_077722992.1 3670563..3671708(+) (rapF) [Bacillus sp. MT(2024)]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQGNYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKMMYADLEDFALDVAKYYHERENFEKAAAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=930068 VP472_RS18245 WP_077722992.1 3670563..3671708(+) (rapF) [Bacillus sp. MT(2024)]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTATTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTGGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGGAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAATATGAATTTTTAGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAAATGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAGAATTTCGAGAAGGCTGCTGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.74

100

0.787
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567