Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   VP472_RS15375 Genome accession   NZ_CP143632
Coordinates   3084270..3084410 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus sp. MT(2024)     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3079270..3089410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP472_RS15350 (VP472_15350) - 3079597..3079980 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  VP472_RS15355 (VP472_15355) comA 3080002..3080646 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  VP472_RS15360 (VP472_15360) comP 3080727..3083033 (-) 2307 WP_153986739.1 sensor histidine kinase Regulator
  VP472_RS15365 (VP472_15365) comX 3083052..3083228 (-) 177 WP_044052947.1 competence pheromone ComX -
  VP472_RS15370 (VP472_15370) - 3083243..3084118 (-) 876 WP_146277410.1 polyprenyl synthetase family protein -
  VP472_RS15375 (VP472_15375) degQ 3084270..3084410 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  VP472_RS15380 (VP472_15380) - 3084875..3085216 (+) 342 WP_014305721.1 hypothetical protein -
  VP472_RS15385 (VP472_15385) - 3085223..3086443 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -
  VP472_RS15390 (VP472_15390) - 3086573..3088039 (-) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  VP472_RS15395 (VP472_15395) - 3088057..3088608 (-) 552 WP_146275407.1 isochorismatase family cysteine hydrolase -
  VP472_RS15400 (VP472_15400) - 3088705..3089103 (-) 399 WP_003152031.1 DUF1694 domain-containing protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=930058 VP472_RS15375 WP_003152043.1 3084270..3084410(-) (degQ) [Bacillus sp. MT(2024)]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=930058 VP472_RS15375 WP_003152043.1 3084270..3084410(-) (degQ) [Bacillus sp. MT(2024)]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891