Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8906_RS06585 Genome accession   NZ_AP028346
Coordinates   1263044..1264012 (+) Length   322 a.a.
NCBI ID   WP_002872671.1    Uniprot ID   Q0P8Q7
Organism   Campylobacter jejuni strain BCH-10335     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1258044..1269012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8906_RS06560 (B10335_12930) cdsA 1258954..1259679 (-) 726 WP_002889945.1 phosphatidate cytidylyltransferase -
  R8906_RS06565 (B10335_12940) - 1259688..1260026 (-) 339 WP_002852397.1 hypothetical protein -
  R8906_RS06570 (B10335_12950) - 1260028..1261335 (-) 1308 WP_002864240.1 NFACT RNA binding domain-containing protein -
  R8906_RS06575 (B10335_12960) mobA 1261397..1261972 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  R8906_RS06580 (B10335_12970) pldA 1261969..1262958 (+) 990 WP_002864239.1 phospholipase A -
  R8906_RS06585 (B10335_12980) ceuB 1263044..1264012 (+) 969 WP_002872671.1 ABC transporter permease Machinery gene
  R8906_RS06590 (B10335_12990) ceuC 1264005..1264943 (+) 939 WP_002854141.1 iron chelate uptake ABC transporter family permease subunit -
  R8906_RS06595 (B10335_13000) ceuD 1264940..1265695 (+) 756 WP_002867308.1 ABC transporter ATP-binding protein -
  R8906_RS06600 (B10335_13010) ceuB 1265708..1266700 (+) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R8906_RS06610 (B10335_13020) - 1266926..1267480 (-) 555 WP_002867306.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35469.40 Da        Isoelectric Point: 9.6678

>NTDB_id=93005 R8906_RS06585 WP_002872671.1 1263044..1264012(+) (ceuB) [Campylobacter jejuni strain BCH-10335]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=93005 R8906_RS06585 WP_002872671.1 1263044..1264012(+) (ceuB) [Campylobacter jejuni strain BCH-10335]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTAATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGGTCTTTAATCTTTATCTTTCTTTTACTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.068

100

0.991

Multiple sequence alignment