Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   VP472_RS10620 Genome accession   NZ_CP143632
Coordinates   2177292..2177900 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus sp. MT(2024)     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2172292..2182900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP472_RS10580 (VP472_10580) - 2173354..2173859 (-) 506 Protein_2032 PTS glucose transporter subunit IIA -
  VP472_RS10585 (VP472_10585) - 2173998..2174411 (+) 414 WP_070082015.1 hypothetical protein -
  VP472_RS10590 (VP472_10590) - 2174441..2174761 (-) 321 WP_330731100.1 YppG family protein -
  VP472_RS10595 (VP472_10595) - 2175054..2175236 (+) 183 WP_003153532.1 YppF family protein -
  VP472_RS10600 (VP472_10600) - 2175275..2175643 (-) 369 WP_070082017.1 YppE family protein -
  VP472_RS10605 (VP472_10605) - 2175689..2175934 (-) 246 WP_039063257.1 DUF5446 family protein -
  VP472_RS10610 (VP472_10610) sspM 2176140..2176244 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  VP472_RS10615 (VP472_10615) - 2176288..2177250 (-) 963 WP_032861546.1 DUF2515 domain-containing protein -
  VP472_RS10620 (VP472_10620) recU 2177292..2177900 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  VP472_RS10625 (VP472_10625) - 2177939..2180720 (+) 2782 Protein_2041 PBP1A family penicillin-binding protein -
  VP472_RS10630 (VP472_10630) - 2180798..2181289 (-) 492 WP_070082019.1 hypothetical protein -
  VP472_RS10635 (VP472_10635) nth 2181286..2181945 (-) 660 WP_003153517.1 endonuclease III -
  VP472_RS10640 (VP472_10640) - 2181964..2182662 (-) 699 WP_070082021.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=930033 VP472_RS10620 WP_003153521.1 2177292..2177900(+) (recU) [Bacillus sp. MT(2024)]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=930033 VP472_RS10620 WP_003153521.1 2177292..2177900(+) (recU) [Bacillus sp. MT(2024)]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896