Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   VP472_RS06935 Genome accession   NZ_CP143632
Coordinates   1331196..1331660 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus sp. MT(2024)     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1326196..1336660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP472_RS06915 (VP472_06915) - 1326676..1328496 (+) 1821 WP_113971599.1 PAS domain-containing protein -
  VP472_RS06920 (VP472_06920) - 1328522..1329691 (-) 1170 WP_070081738.1 aminotransferase A -
  VP472_RS06925 (VP472_06925) - 1329892..1330053 (-) 162 WP_003154625.1 hypothetical protein -
  VP472_RS06930 (VP472_06930) cheV 1330242..1331153 (+) 912 WP_003154623.1 chemotaxis protein CheV -
  VP472_RS06935 (VP472_06935) kre 1331196..1331660 (-) 465 WP_003154622.1 YkyB family protein Regulator
  VP472_RS06940 (VP472_06940) - 1331783..1333075 (-) 1293 WP_003154621.1 MFS transporter -
  VP472_RS06945 (VP472_06945) - 1333151..1333645 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  VP472_RS06950 (VP472_06950) - 1333720..1334583 (-) 864 WP_146276666.1 metallophosphoesterase -
  VP472_RS06955 (VP472_06955) fadH 1334725..1335489 (+) 765 WP_076851224.1 2,4-dienoyl-CoA reductase -
  VP472_RS06960 (VP472_06960) - 1335600..1336148 (+) 549 Protein_1311 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=930025 VP472_RS06935 WP_003154622.1 1331196..1331660(-) (kre) [Bacillus sp. MT(2024)]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=930025 VP472_RS06935 WP_003154622.1 1331196..1331660(-) (kre) [Bacillus sp. MT(2024)]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929