Detailed information NTG0930005

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: VP472_RS01970
• Genome accession: NZ_CP143632
• Coordinates: 388873..390021 (+)
• Length: 382 a.a.
• NCBI ID: WP_014304340.1
• Uniprot ID: I2C1C2
• Organism: Bacillus sp. MT(2024)
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 383873..395021

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VP472_RS01950 (VP472_01950)	-	384270..384953 (-)	684	WP_146276109.1	ABC transporter ATP-binding protein	-
VP472_RS01955 (VP472_01955)	-	384968..386404 (-)	1437	WP_146276111.1	ABC transporter permease	-
VP472_RS01960 (VP472_01960)	-	386617..387300 (+)	684	WP_094247243.1	response regulator transcription factor	-
VP472_RS01965 (VP472_01965)	-	387287..388720 (+)	1434	WP_162008365.1	HAMP domain-containing sensor histidine kinase	-
VP472_RS01970 (VP472_01970)	rapC	388873..390021 (+)	1149	WP_014304340.1	Rap family tetratricopeptide repeat protein	Regulator
VP472_RS01975 (VP472_01975)	phrC	390005..390124 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
VP472_RS01980 (VP472_01980)	-	390274..390369 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
VP472_RS01985 (VP472_01985)	-	390464..391828 (-)	1365	WP_146276115.1	aspartate kinase	-
VP472_RS01990 (VP472_01990)	ceuB	392243..393196 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
VP472_RS01995 (VP472_01995)	-	393186..394133 (+)	948	WP_077721797.1	iron chelate uptake ABC transporter family permease subunit	-
VP472_RS02000 (VP472_02000)	-	394127..394885 (+)	759	WP_022552588.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45494.75 Da
• Isoelectric Point: 4.9939

>NTDB_id=930005 VP472_RS01970 WP_014304340.1 388873..390021(+) (rapC) [Bacillus sp. MT(2024)]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=930005 VP472_RS01970 WP_014304340.1 388873..390021(+) (rapC) [Bacillus sp. MT(2024)]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGACGAGGAAACA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

3D structure

• AlphaFold DB: I2C1C2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568