Detailed information NTG0929999

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: VP472_RS00580
• Genome accession: NZ_CP143632
• Coordinates: 104297..106735 (+)
• Length: 812 a.a.
• NCBI ID: WP_052587023.1
• Uniprot ID: -
• Organism: Bacillus sp. MT(2024)
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 99297..111735

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VP472_RS00565 (VP472_00565)	ctsR	102174..102638 (+)	465	WP_016935919.1	transcriptional regulator CtsR	-
VP472_RS00570 (VP472_00570)	-	102652..103209 (+)	558	WP_003156397.1	UvrB/UvrC motif-containing protein	-
VP472_RS00575 (VP472_00575)	-	103209..104300 (+)	1092	Protein_85	protein arginine kinase	-
VP472_RS00580 (VP472_00580)	clpC	104297..106735 (+)	2439	WP_052587023.1	ATP-dependent protease ATP-binding subunit ClpC	Regulator
VP472_RS00585 (VP472_00585)	-	106986..107222 (+)	237	WP_052587026.1	mersacidin/lichenicidin family type 2 lantibiotic	-
VP472_RS00590 (VP472_00590)	-	107279..110320 (+)	3042	WP_102421957.1	type 2 lanthipeptide synthetase LanM family protein	-

Sequence

Protein

• Length: 812 a.a.
• Molecular weight: 90206.62 Da
• Isoelectric Point: 5.7558

>NTDB_id=929999 VP472_RS00580 WP_052587023.1 104297..106735(+) (clpC) [Bacillus sp. MT(2024)]
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESATSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGTNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTDA

Nucleotide

• Length: 2439 bp

>NTDB_id=929999 VP472_RS00580 WP_052587023.1 104297..106735(+) (clpC) [Bacillus sp. MT(2024)]
ATGATGTTTGGAAGGTTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATACTATTAGGGTTAGTCCGTGAAGGTGAAGGGATCGCATTTAAAGCTTTAGAAGCTCTTG
GCCTTAATTCAGATAAAATGCAGAAAGAAGTGGAAAGTTTGATCGGTCGAGGGCAGGAAAGTGCCACCTCTGTTCCTCAT
TACACACCTCGAGCCAAAAAGGTAATAGAGCTATCAATGGATGAAGCCAGAAAGCTAGGACATTCTTATGTGGGAACAGA
ACACATACTTCTCGGATTGATTCGTGAAGGAGAAGGCGTGGCGGCGAGAGTTCTGAATAATCTCGGTGTCAGCTTGAATA
AAGCGAGACAGCAAGTGCTGCAGCTTCTGGGAAGCAATGAGACGGGATCTTCTGCATCCGGTACCAACAGCAATGCAAAC
ACGCCGACGCTTGACAGTCTGGCGCGTGATTTAACTGCGATTGCGAAGGAAGACAGTCTTGATCCGGTTATCGGGCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACGAAAAATAATCCCGTTCTTATCGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCTGAAGGCCTTGCACAGCAGATCATCAATAATGAAGTGCCGGAAATATTACGTGATAAACGCGTA
ATGACGTTAGACATGGGTACGGTTGTAGCCGGTACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAAGTAATGGA
TGAAATACGTCAGGCCGGCAATATTATTTTATTCATTGACGAACTGCATACACTGATCGGAGCGGGGGGAGCAGAAGGTG
CGATTGATGCATCGAATATCTTAAAACCTTCACTGGCCCGCGGAGAGCTTCAATGCATCGGTGCCACAACGCTTGATGAA
TACCGTAAATATATCGAAAAAGACGCGGCTCTCGAGCGCCGTTTCCAGCCGATTCAGGTGGATCAGCCGTCAGCCGATGA
AAGCATTCAAATTTTAAAAGGGCTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATCGAAG
CCGCGGTTAAATTGTCCGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGATGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAGAGCCAGGAGTTTGAAAAAGCGGCTTCCCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGACACGAAAAAAACCTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATCGCGATGGTT
GTATCCAGCTGGACCGGGGTGCCCGTATCTAAAATTGCCCAAACGGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCATTCCCGCGTCATCGGCCAGGATGAAGCCGTTGTAGCCGTGGCAAAGGCTGTCAGACGTGCAAGAGCCGGACTGAAGG
ACCCGAAACGTCCGATTGGTTCATTCATCTTCTTAGGCCCTACAGGCGTTGGGAAGACAGAGCTGGCAAGAGCGCTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACACTCGACTTCACGTCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTATTGCTTGATGAAATTGAAAAAGCGCACCCTGATGTGTTTAACATTCTCCTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTGGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGGGCGAGCGAGCTGAA
GCGCAACAAATATGTGGGCTTCAATGTCCAGGATGAATCACAAAACCATAAAGATATGAAAGACAAAGTCATGGGAGAGC
TGAAGCGTGCCTTCAGACCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGATCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATCGAGCTGACGGATGC
TGCAAAAGCAAAAGTAGCAGAAGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGACCGGTTATCAGAAGAACTCCTCAGAGGCAATATTGATAAAGGCCAGCACATTGTTCTTGATGTTGAGGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACCGATGCTTAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (206-318)

• AAA lid domain (AAA_lid_9) (344-445)

• AAA domain (Cdc48 subfamily) (AAA_2) (537-709)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (715-794)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-144)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-69)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	96.794	99.877	0.967
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.688	98.645	0.49
clpC	Streptococcus thermophilus LMD-9	46.359	100	0.47
clpC	Streptococcus thermophilus LMG 18311	46.117	100	0.468
clpC	Streptococcus mutans UA159	44.203	100	0.451
clpC	Streptococcus pneumoniae D39	45.018	100	0.451
clpC	Streptococcus pneumoniae Rx1	45.018	100	0.451
clpC	Streptococcus pneumoniae TIGR4	44.772	100	0.448
clpE	Streptococcus mutans UA159	53.067	80.296	0.426
clpC	Lactococcus lactis subsp. cremoris KW2	49.709	84.729	0.421
clpE	Streptococcus pneumoniae TIGR4	52.227	80.172	0.419
clpE	Streptococcus pneumoniae Rx1	52.227	80.172	0.419
clpE	Streptococcus pneumoniae D39	52.227	80.172	0.419
clpE	Streptococcus pneumoniae R6	52.227	80.172	0.419