Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8906_RS05825 Genome accession   NZ_AP028346
Coordinates   1107355..1107849 (+) Length   164 a.a.
NCBI ID   WP_002859279.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10335     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1102355..1112849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8906_RS05810 (B10335_11410) - 1103741..1104919 (-) 1179 WP_002856548.1 metal-dependent hydrolase -
  R8906_RS05815 (B10335_11420) gpsA 1104929..1105825 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8906_RS05820 (B10335_11430) gatB 1105822..1107240 (-) 1419 WP_052778493.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8906_RS05825 (B10335_11440) luxS 1107355..1107849 (+) 495 WP_002859279.1 S-ribosylhomocysteine lyase Regulator
  R8906_RS05830 (B10335_11450) - 1108162..1109154 (+) 993 WP_002869635.1 isopenicillin N synthase family dioxygenase -
  R8906_RS05835 (B10335_11460) - 1109165..1109935 (+) 771 WP_002852735.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8906_RS05840 (B10335_11470) metE 1109947..1112211 (+) 2265 WP_002852733.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18212.25 Da        Isoelectric Point: 7.3250

>NTDB_id=92997 R8906_RS05825 WP_002859279.1 1107355..1107849(+) (luxS) [Campylobacter jejuni strain BCH-10335]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=92997 R8906_RS05825 WP_002859279.1 1107355..1107849(+) (luxS) [Campylobacter jejuni strain BCH-10335]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGCGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCTAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713

Multiple sequence alignment