Detailed information NTG0092995

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: R8906_RS05585
• Genome accession: NZ_AP028346
• Coordinates: 1060815..1061774 (+)
• Length: 319 a.a.
• NCBI ID: WP_002876195.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain BCH-10335
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1055815..1066774

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8906_RS05560 (B10335_10900)	-	1056164..1057186 (-)	1023	WP_002876190.1	hypothetical protein	-
R8906_RS05565 (B10335_10910)	-	1057257..1058030 (+)	774	WP_002866160.1	glycosyltransferase family 25 protein	-
R8906_RS05570 (B10335_10920)	wlaTB	1058023..1058979 (+)	957	WP_002860237.1	class E lipooligosaccharide biosynthesis protein WlaTB	-
R8906_RS05575 (B10335_10930)	wlaTC	1058976..1059935 (+)	960	WP_002876191.1	class E lipooligosaccharide biosynthesis protein WlaTC	-
R8906_RS05580 (B10335_10940)	-	1059938..1060756 (-)	819	WP_002876193.1	glycosyltransferase family 2 protein	-
R8906_RS05585 (B10335_10950)	waaF	1060815..1061774 (+)	960	WP_002876195.1	lipopolysaccharide heptosyltransferase II	Regulator
R8906_RS05590 (B10335_10960)	gmhA	1061755..1062315 (-)	561	WP_002876196.1	D-sedoheptulose 7-phosphate isomerase	-
R8906_RS05595 (B10335_10970)	rfaE1	1062312..1063697 (-)	1386	WP_002910336.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
R8906_RS05600 (B10335_10980)	rfaD	1063690..1064643 (-)	954	WP_002860242.1	ADP-glyceromanno-heptose 6-epimerase	-
R8906_RS05605 (B10335_10990)	gmhB	1064644..1065205 (-)	562	Protein_1083	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
R8906_RS05610 (B10335_11000)	-	1065286..1065588 (+)	303	WP_002852762.1	c-type cytochrome	-
R8906_RS05615 (B10335_11010)	ccoS	1065611..1065817 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36607.08 Da
• Isoelectric Point: 10.2870

>NTDB_id=92995 R8906_RS05585 WP_002876195.1 1060815..1061774(+) (waaF) [Campylobacter jejuni strain BCH-10335]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR

Nucleotide

• Length: 960 bp

>NTDB_id=92995 R8906_RS05585 WP_002876195.1 1060815..1061774(+) (waaF) [Campylobacter jejuni strain BCH-10335]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterProScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.025	99.687	0.937