Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V2I06_RS11085 Genome accession   NZ_CP143584
Coordinates   2326823..2328496 (-) Length   557 a.a.
NCBI ID   WP_002393460.1    Uniprot ID   -
Organism   Enterococcus faecalis strain IDRL-7538     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2321823..2333496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2I06_RS11055 ftsL 2322837..2323244 (-) 408 WP_002358883.1 cell division protein FtsL -
  V2I06_RS11060 rsmH 2323261..2324217 (-) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  V2I06_RS11065 mraZ 2324232..2324717 (-) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  V2I06_RS11070 - 2324951..2325343 (-) 393 WP_002383401.1 DUF3397 domain-containing protein -
  V2I06_RS11075 - 2325588..2326553 (+) 966 WP_002387038.1 magnesium transporter CorA family protein -
  V2I06_RS11080 - 2326621..2326731 (+) 111 WP_002383399.1 DUF4044 domain-containing protein -
  V2I06_RS11085 recN 2326823..2328496 (-) 1674 WP_002393460.1 DNA repair protein RecN Machinery gene
  V2I06_RS11090 - 2328514..2328963 (-) 450 WP_002363397.1 arginine repressor -
  V2I06_RS11095 - 2329102..2329917 (-) 816 WP_002363395.1 TlyA family RNA methyltransferase -
  V2I06_RS11100 - 2329931..2330812 (-) 882 WP_002355879.1 polyprenyl synthetase family protein -
  V2I06_RS11105 - 2330812..2331042 (-) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  V2I06_RS11110 xseA 2331044..2332390 (-) 1347 WP_002355877.1 exodeoxyribonuclease VII large subunit -
  V2I06_RS11115 - 2332400..2333245 (-) 846 WP_002363394.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62600.97 Da        Isoelectric Point: 4.5521

>NTDB_id=929905 V2I06_RS11085 WP_002393460.1 2326823..2328496(-) (recN) [Enterococcus faecalis strain IDRL-7538]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDAVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=929905 V2I06_RS11085 WP_002393460.1 2326823..2328496(-) (recN) [Enterococcus faecalis strain IDRL-7538]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGTGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGAGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATGCTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGACGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGCGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCGGCTCATCAACAAGCGTTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACGGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGTTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTTAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.168

100

0.496