Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   R8906_RS03030 Genome accession   NZ_AP028346
Coordinates   578073..578456 (+) Length   127 a.a.
NCBI ID   WP_002918422.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10335     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 573073..583456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8906_RS03010 (B10335_05980) - 573152..575086 (-) 1935 WP_002870085.1 RNB domain-containing ribonuclease -
  R8906_RS03015 (B10335_05990) ilvC 575205..576227 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  R8906_RS03020 (B10335_06000) - 576231..577313 (+) 1083 WP_002852295.1 divergent polysaccharide deacetylase family protein -
  R8906_RS03025 (B10335_06010) dprA 577303..578076 (+) 774 WP_002918419.1 DNA-processing protein DprA Machinery gene
  R8906_RS03030 (B10335_06020) dprB 578073..578456 (+) 384 WP_002918422.1 Holliday junction resolvase RuvX Machinery gene
  R8906_RS03035 (B10335_06030) - 578485..579324 (+) 840 WP_079460160.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8906_RS03040 (B10335_06040) msrA 579501..579998 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8906_RS03045 (B10335_06050) ppa 580040..580558 (-) 519 WP_002867724.1 inorganic diphosphatase -
  R8906_RS03050 (B10335_06060) adk 580568..581146 (-) 579 WP_002859580.1 adenylate kinase -
  R8906_RS03055 (B10335_06070) aspS 581143..582894 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14188.71 Da        Isoelectric Point: 9.0848

>NTDB_id=92983 R8906_RS03030 WP_002918422.1 578073..578456(+) (dprB) [Campylobacter jejuni strain BCH-10335]
MRALALDIGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=92983 R8906_RS03030 WP_002918422.1 578073..578456(+) (dprB) [Campylobacter jejuni strain BCH-10335]
ATGAGAGCTTTGGCTTTAGATATAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGAATACGGCATAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment