Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   V2I71_RS25195 Genome accession   NZ_CP143575
Coordinates   5244494..5245444 (-) Length   316 a.a.
NCBI ID   WP_053536781.1    Uniprot ID   A0A9X1IUS9
Organism   Peribacillus frigoritolerans strain GR2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5239494..5250444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2I71_RS25180 (V2I71_25180) - 5241646..5242590 (-) 945 WP_412760625.1 siderophore ABC transporter substrate-binding protein -
  V2I71_RS25185 (V2I71_25185) - 5242802..5243560 (-) 759 WP_328144760.1 ABC transporter ATP-binding protein -
  V2I71_RS25190 (V2I71_25190) - 5243554..5244501 (-) 948 WP_034310068.1 iron chelate uptake ABC transporter family permease subunit -
  V2I71_RS25195 (V2I71_25195) ceuB 5244494..5245444 (-) 951 WP_053536781.1 ABC transporter permease Machinery gene
  V2I71_RS25200 (V2I71_25200) - 5245710..5246051 (+) 342 WP_330501839.1 DUF1450 domain-containing protein -
  V2I71_RS25205 (V2I71_25205) - 5246731..5247294 (-) 564 WP_328144763.1 HD-GYP domain-containing protein -
  V2I71_RS25210 (V2I71_25210) - 5247842..5247979 (-) 138 WP_170956515.1 hypothetical protein -
  V2I71_RS25215 (V2I71_25215) - 5248610..5249299 (+) 690 WP_098185527.1 WxL domain-containing protein -
  V2I71_RS25220 (V2I71_25220) - 5249328..5250023 (+) 696 WP_330501840.1 WxL domain-containing protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34941.26 Da        Isoelectric Point: 9.6490

>NTDB_id=929765 V2I71_RS25195 WP_053536781.1 5244494..5245444(-) (ceuB) [Peribacillus frigoritolerans strain GR2]
MKIRYLVMALIVLSFTSLFIGVKDITPLDLLNLSDDKVQIMLQSRFPRMVTIVIAGIVMSISGLIMQQLSRNKFVSPTTA
GTMDSARLGLLLAIIIFPSAALIEKMAFAFIFALAGTFLFMKILDQVKYKDTIFIPLVGLMFGNIVGSISTFFAYKYDLI
QSLNTWMNGDFSMIMSGRYELIYLSIPLVILAYFFANKFTVAGMGEEFAINLGLNYKFIVNFGLIIVALSSTVVLLTVGT
IPFIGLIVPNIVSLYLGDNLKKSLSHTALLGAVFLLICDILGRILIYPFEIPIGLVVGVIGSAVFIYLILRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=929765 V2I71_RS25195 WP_053536781.1 5244494..5245444(-) (ceuB) [Peribacillus frigoritolerans strain GR2]
ATGAAGATAAGATATTTAGTCATGGCGTTAATTGTTTTATCATTTACGTCATTATTCATTGGTGTAAAAGATATTACCCC
CCTGGATTTATTGAATCTAAGTGATGATAAAGTGCAAATCATGCTGCAAAGCCGTTTCCCTAGAATGGTGACCATAGTCA
TTGCCGGTATTGTGATGAGTATAAGCGGTCTGATCATGCAGCAATTGAGCCGCAATAAATTTGTGTCCCCGACGACTGCC
GGTACCATGGACTCTGCAAGGCTGGGACTTCTTCTTGCCATTATCATTTTTCCATCGGCAGCACTTATTGAGAAAATGGC
ATTCGCTTTCATATTCGCTTTGGCAGGTACATTCTTGTTCATGAAAATTCTTGATCAAGTGAAATATAAGGATACGATCT
TCATTCCATTGGTTGGTTTGATGTTTGGTAATATCGTAGGATCGATCTCGACTTTCTTTGCCTATAAATATGATTTGATT
CAAAGCCTCAACACATGGATGAATGGTGATTTCTCGATGATCATGTCGGGAAGGTACGAACTTATATATCTGAGTATCCC
GCTAGTCATTCTCGCATACTTCTTTGCCAATAAATTCACTGTGGCAGGGATGGGAGAGGAGTTTGCTATCAATCTAGGAC
TCAATTATAAGTTTATAGTCAATTTTGGATTGATCATCGTGGCATTATCCTCCACTGTCGTTTTGTTAACGGTGGGAACG
ATTCCTTTCATAGGATTGATCGTACCGAATATTGTATCCCTTTACCTTGGTGACAATTTGAAAAAGAGTCTTTCTCATAC
AGCATTGCTAGGGGCAGTCTTCCTATTGATCTGCGATATTCTGGGCAGGATCCTTATATATCCATTTGAAATCCCGATCG
GACTCGTGGTTGGTGTGATAGGAAGCGCCGTATTTATCTATCTGATACTGAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.316

100

0.503