Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   ACB348_RS02860 Genome accession   NZ_CP167002
Coordinates   520207..522192 (+) Length   661 a.a.
NCBI ID   WP_032466987.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 515207..527192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB348_RS02840 (ACB348_02840) - 515574..516275 (+) 702 WP_002988870.1 MIP/aquaporin family protein -
  ACB348_RS02845 (ACB348_02845) - 516384..517730 (+) 1347 WP_002983562.1 FAD/NAD(P)-binding oxidoreductase -
  ACB348_RS02850 (ACB348_02850) - 517720..519219 (+) 1500 WP_111704947.1 helix-turn-helix domain-containing protein -
  ACB348_RS02855 (ACB348_02855) fsa 519345..519989 (+) 645 WP_111704948.1 fructose-6-phosphate aldolase -
  ACB348_RS02860 (ACB348_02860) recP/tkt 520207..522192 (+) 1986 WP_032466987.1 transketolase Machinery gene
  ACB348_RS02865 (ACB348_02865) - 522387..522653 (+) 267 WP_003059182.1 bacteriocin immunity protein -
  ACB348_RS02870 (ACB348_02870) - 522687..523421 (+) 735 WP_002994254.1 ABC transporter ATP-binding protein -
  ACB348_RS02875 (ACB348_02875) - 523426..525054 (+) 1629 WP_111704949.1 ABC transporter permease -
  ACB348_RS02880 (ACB348_02880) proB 525118..525939 (+) 822 WP_111704950.1 glutamate 5-kinase -
  ACB348_RS02885 (ACB348_02885) - 525932..527182 (+) 1251 WP_111704951.1 glutamate-5-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71334.09 Da        Isoelectric Point: 4.6233

>NTDB_id=929762 ACB348_RS02860 WP_032466987.1 520207..522192(+) (recP/tkt) [Streptococcus pyogenes strain Isolate 30]
MTFDAIDQLAVNTVRTLSMDAIQAANSGHPGLPMGAAPMAYVLWNHFMNINPKTSRNWSNRDRFILSAGHGSAMLYSLLH
LAGYDLSVEDLKNFRQWGSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTFALNGDG
DLMEGVSQEAASMAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKGRFEAYGWQHILVKDGNDLEEIAAAIEAAKAETE
KPTIIEVKTIIGFGAEKQGTSAVHGAPLGAEGIAFAKKAYQWTHQDFEVPAEVTERFAQGLQARGEKAEQAWNDLFAAYE
AEYPELAAEYQKAFANEAAQVELEAHELGSSMASRVSSQQAIQQISEQVASFWGGSADLSASNNTMVKAETDFQPGHYEG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPTVYVMTHDSIAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRAIAETDRPTMLVLTRQNLPVLEGTKELAEDGLNKGAYILSEAKGDLDGILIATGSEV
KLAMDTQEALEAEGIHVRVVSMPSQNIFDEQSAEYKESILPAAVTKRLAIEAGSSFGWAKYVGLAGKTLTIDTWGASAPG
NRIFEEYGFTVANATELYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=929762 ACB348_RS02860 WP_032466987.1 520207..522192(+) (recP/tkt) [Streptococcus pyogenes strain Isolate 30]
ATGACATTTGATGCAATTGACCAATTGGCAGTAAACACTGTCCGCACCCTATCAATGGATGCCATTCAAGCGGCAAATTC
TGGACACCCAGGACTTCCAATGGGGGCAGCACCTATGGCCTATGTTCTTTGGAATCACTTCATGAACATCAATCCCAAAA
CAAGCCGTAATTGGTCAAACAGAGACCGTTTTATCCTATCAGCAGGTCATGGAAGTGCCATGCTTTATAGCTTGTTGCAT
TTAGCAGGTTATGATTTATCTGTAGAAGATTTAAAGAACTTCCGTCAATGGGGTTCTAAAACACCAGGTCACCCAGAAGT
GAACCACACAGACGGTGTCGAAGCAACCACAGGACCTCTTGGTCAAGGGATCGCAAATGCCGTTGGTATGGCCATGGCAG
AAGCTCACCTAGCAGCTAAATTTAACAAACCAGGCTTTGACATCGTTGATCACTACACATTTGCTTTGAATGGTGACGGT
GACCTTATGGAAGGGGTCAGCCAAGAAGCAGCAAGTATGGCAGGACATTTAAAACTTGGGAAATTGGTCTTGCTATATGA
TTCAAACGACATCTCTCTTGATGGTCCAACCTCTATGGCTTTCACAGAAGATGTGAAAGGACGTTTCGAAGCTTATGGTT
GGCAACATATCCTTGTGAAAGATGGAAATGATTTAGAAGAAATTGCAGCTGCTATTGAAGCAGCTAAAGCTGAAACTGAG
AAACCAACCATCATCGAAGTCAAAACCATTATTGGTTTTGGTGCCGAAAAACAAGGAACTTCAGCTGTTCACGGCGCTCC
TCTTGGAGCAGAAGGCATTGCTTTTGCCAAAAAAGCTTACCAATGGACTCATCAAGATTTTGAAGTGCCTGCTGAAGTAA
CAGAGCGCTTTGCTCAAGGTCTTCAAGCGCGTGGTGAAAAAGCAGAACAAGCCTGGAATGACTTGTTTGCAGCTTATGAA
GCAGAATATCCAGAATTAGCAGCAGAATACCAAAAAGCCTTTGCTAACGAAGCTGCTCAAGTAGAACTTGAAGCGCACGA
ACTTGGTAGCTCAATGGCGAGTCGTGTATCCAGTCAACAAGCCATCCAACAAATTTCAGAACAAGTAGCCTCTTTCTGGG
GTGGGTCAGCAGACCTTTCAGCTTCAAACAATACTATGGTTAAGGCTGAAACAGATTTCCAACCAGGTCACTACGAAGGC
CGTAACATCTGGTTTGGCGTTCGTGAATTTGCCATGGCTGCAGCCATGAACGGTATTGCCCTTCACGGCGGGACACGCGT
TTACGGCGGAACCTTCTTTGTCTTCTCAAACTATCTTCTTCCAGCTGTTCGTATGGCAGCGCTCCAAAACTTGCCAACAG
TTTATGTCATGACACATGATTCTATCGCTGTCGGTGAAGATGGGCCAACGCACGAACCAATTGAACAATTGGCAAGTGTT
CGCTCAATGCCTAACTTGAACGTTATTCGTCCAGCAGACGGTAACGAAACAAATGCTGCTTGGAAACGTGCCATTGCTGA
AACAGATCGCCCAACCATGCTTGTATTGACGCGTCAAAACCTTCCAGTGCTTGAGGGCACAAAAGAATTGGCAGAAGATG
GTCTTAACAAAGGAGCTTATATCTTGTCAGAAGCCAAAGGCGACCTTGATGGTATCTTGATTGCAACAGGTTCAGAAGTG
AAACTGGCAATGGATACTCAAGAAGCTCTTGAAGCAGAAGGCATTCATGTGCGTGTCGTATCTATGCCATCACAAAATAT
CTTTGACGAACAGTCAGCAGAGTATAAAGAAAGCATCCTACCAGCAGCTGTGACTAAACGTCTCGCTATCGAAGCAGGTT
CAAGCTTTGGCTGGGCAAAATATGTCGGCCTAGCAGGAAAAACATTGACCATTGACACTTGGGGTGCTTCAGCTCCAGGA
AATCGTATCTTCGAAGAATATGGTTTCACTGTGGCAAATGCAACTGAGTTATACAAATCACTCTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.623

99.546

0.554