Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V2I71_RS17330 Genome accession   NZ_CP143575
Coordinates   3657442..3659157 (-) Length   571 a.a.
NCBI ID   WP_048681817.1    Uniprot ID   A0AAW9N8U9
Organism   Peribacillus frigoritolerans strain GR2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3652442..3664157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2I71_RS17310 (V2I71_17310) - 3652540..3653449 (-) 910 Protein_3387 transposase -
  V2I71_RS17315 (V2I71_17315) - 3653716..3654450 (-) 735 WP_330501302.1 glycerophosphodiester phosphodiesterase -
  V2I71_RS17320 (V2I71_17320) spo0A 3654867..3655658 (-) 792 WP_330501303.1 sporulation transcription factor Spo0A -
  V2I71_RS17325 (V2I71_17325) spoIVB 3655988..3657280 (-) 1293 WP_098186587.1 SpoIVB peptidase -
  V2I71_RS17330 (V2I71_17330) recN 3657442..3659157 (-) 1716 WP_048681817.1 DNA repair protein RecN Machinery gene
  V2I71_RS17335 (V2I71_17335) ahrC 3659180..3659629 (-) 450 WP_034308279.1 transcriptional regulator AhrC/ArgR -
  V2I71_RS17340 (V2I71_17340) - 3659872..3660699 (-) 828 WP_057278791.1 TlyA family RNA methyltransferase -
  V2I71_RS17345 (V2I71_17345) dxs 3660704..3662596 (-) 1893 WP_330501304.1 1-deoxy-D-xylulose-5-phosphate synthase -
  V2I71_RS17350 (V2I71_17350) - 3662846..3663739 (-) 894 WP_057278792.1 polyprenyl synthetase family protein -
  V2I71_RS17355 (V2I71_17355) - 3663741..3663974 (-) 234 WP_328145764.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64511.41 Da        Isoelectric Point: 5.2858

>NTDB_id=929748 V2I71_RS17330 WP_048681817.1 3657442..3659157(-) (recN) [Peribacillus frigoritolerans strain GR2]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKHSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=929748 V2I71_RS17330 WP_048681817.1 3657442..3659157(-) (recN) [Peribacillus frigoritolerans strain GR2]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGATAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGTGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTCTTGGTTGGGGGACGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAAGCTGAAATAGAAGGATTATTCCAAATTGAAGATGAAAAACACCCGGTCTTTGCCAAA
GCGGAAGAGTTTGGCCTGGATATGAATGATGGGATGGCGATACTTCGAAGGGATATCTCACAGAGCGGTAAAAGCGTTTG
CAGGGTAAATGGAAAGCTGGTGACGATTTCCACTTTGCGTGAGATAGGGCGGACATTGATAGACATCCATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCATCTTCCGCTGCTCGATCAATTCGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGGTATGAAACCGCTTCTAAACAATTGAATGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATCTGATCCAATTTCAATTCGACGAAATCCAAAAGGCTGATCTGAAATTACGCGAAGATGAAGAAT
TGATGGAAGAACGGAAGAAAATTAATAATTTCGAAAAAATCCATGAAGCGCTGCAAACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAGCA
CAGCTCTGAAACCGTTTCAAATAGCTACTTCCTGCTCGAAGAGGCTGTGTCAAACATCCGGGACCAATTGGACTCTTTGG
ATTATGATACAGAACGTGTGGAATTCATTGAAAGTCGACTTAATGAAATAAATCAATTAAAGCGTAAATACGGACGGACC
ATCGAGGAAATCCTGGAATATGGGGCCGCAATTGAAGAAGAAGTCGAAAAGCTGCAAAATAGGGAAACCCATATCGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATCTTATCGTCGAAGCAAAGAATCTGTCTGAACTTCGCCAGAAATTCG
CTCAGCAGCTAACCAAAAAGATTCATCAGGAATTAAAGGATCTATATATGGAAAAAACAATTTTTGAACCTCATTTCCTT
CAGACAGCCTATACTTTCGATGAATTGTCAGATAGGGGGATTAATCAGTCAGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCGTTAAAACCTCTTTCTAAAATCGCATCTGGTGGAGAACTGTCGAGGATCATGCTGGCTTTGA
AAAGCATTTTCTCCAAGCATCAAGGGATAACGTCCATTATATTTGATGAAGTGGATACAGGTGTGAGCGGACGGGTTGCA
CAATCCATTGCAGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTATTGTGCATATCCCATTTGCCACAGGTGGCAGC
CATGGCGGATACTCACCTTTTCATAGCGAAAAATGTAAGGGCCGGACGCACGAATACCTCGGTCAAGCCGCTAATTGAAA
CTGAAAAAATAAAAGAAATTGGCAGGATGATTTCGGGAGTAGAGATTACGGACTTGACGAAACAACATGCCAATGAATTA
ATCCAGCTGGCCAAAAGGCTGAAGATTACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.764

100

0.613