Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V2I71_RS06565 Genome accession   NZ_CP143575
Coordinates   1358242..1360059 (+) Length   605 a.a.
NCBI ID   WP_328144397.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain GR2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1353242..1365059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2I71_RS06545 (V2I71_06545) spxA 1353611..1354006 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  V2I71_RS06550 (V2I71_06550) mecA 1354501..1355169 (+) 669 WP_034314498.1 adaptor protein MecA -
  V2I71_RS06555 (V2I71_06555) cls 1355260..1356768 (+) 1509 WP_328144395.1 cardiolipin synthase -
  V2I71_RS06560 (V2I71_06560) - 1356866..1358074 (+) 1209 WP_191930786.1 competence protein CoiA -
  V2I71_RS06565 (V2I71_06565) pepF 1358242..1360059 (+) 1818 WP_328144397.1 oligoendopeptidase F Regulator
  V2I71_RS06570 (V2I71_06570) - 1360973..1361866 (-) 894 WP_082201283.1 ClpXP adapter SpxH family protein -
  V2I71_RS06575 (V2I71_06575) - 1361863..1362267 (-) 405 WP_053534150.1 globin -
  V2I71_RS06580 (V2I71_06580) - 1362501..1363166 (-) 666 WP_323602051.1 lytic transglycosylase domain-containing protein -
  V2I71_RS06585 (V2I71_06585) - 1363189..1363767 (-) 579 WP_328144398.1 CYTH domain-containing protein -
  V2I71_RS06590 (V2I71_06590) - 1364087..1364707 (+) 621 WP_034314484.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69852.26 Da        Isoelectric Point: 4.6898

>NTDB_id=929740 V2I71_RS06565 WP_328144397.1 1358242..1360059(+) (pepF) [Peribacillus frigoritolerans strain GR2]
MAQETKTNTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEAHKGTLGESAEKLFAALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDESIVEGFLEEKEELKLYKHSLEEINLQRPHILSAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYIRFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSNNNIPETVYDNLVKTVNDNLPLLHRYLDLRKKVLELDELHMYDLFTPLVKEVKM
EVTYDEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTCNENLLNDYLLNSIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKAQ
NGEALTADMLTKEYYELNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=929740 V2I71_RS06565 WP_328144397.1 1358242..1360059(+) (pepF) [Peribacillus frigoritolerans strain GR2]
ATGGCACAGGAAACAAAAACGAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACGTGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCCTTCAAAGCGGTAAAGGAAGACCTCAAGAAAGCGGAGGCGCATAAAGGGA
CGTTGGGAGAAAGCGCAGAAAAGTTATTTGCGGCCCTCCAACTTCAAGATGAGGTTTTCGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGATCAAGATACAACCAATCCATTTTATCAAGGGATGGAGGATCGGGCAAAAGCTTTATA
CGCACAGGCAGCGGCTGCGTTTTCATATATGGTTCCTGAACTATTGAGTATTGACGAAAGTATAGTGGAAGGGTTTTTGG
AAGAAAAAGAAGAATTGAAATTATATAAACATTCTTTAGAGGAAATTAATCTTCAGAGACCCCATATCCTATCAGCAGAG
CAGGAAGAACTATTGGCGCAGGCATCAGAAGTACTCGATGCATCGGGTAATACTTTCGGTATGCTTAACAATGCCGATCT
GAAATTCCCGACCATCAAGGATGAAGAGGGAAATGAAGTGGAAATTACTCACGGCAGGTATATCAGATTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTACGGGGAGTTCCGTAATACATTTGCTTCAACA
CTGTCAGGTGAGGTGAAAAACCACAACTTCAATGCCACGGTTCGAAAATATGATTCAGCACGCCAAGCGGCGTTAAGTAA
TAATAACATTCCGGAGACCGTATACGATAATCTCGTTAAAACGGTCAACGACAACTTGCCATTACTGCACCGTTATCTTG
ATTTACGTAAAAAGGTACTGGAATTAGATGAACTTCATATGTATGATTTATTCACTCCTCTTGTTAAAGAAGTGAAGATG
GAAGTGACATATGACGAGGCCAAAGATTATGTCCTTAAAGGTCTTGCTCCGCTAGGGGAGGACTATTTGAACGTTTTGAA
AGAGGGATTTGAAAACCGTTGGGTCGATGTGCATGAGAACAAAGGGAAACGAAGCGGTGCCTATTCTTCGGGGACATACG
GGACGAACCCTTATATTCTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTTGGGCATTCG
GTCCATAGCTACTATACACGTAAACATCAGCCATATCCATACGGGAATTATTCAATATTTGTAGCGGAAGTTGCATCCAC
TTGTAATGAAAACCTGTTGAATGATTATTTACTGAATTCGATTGAAGATGAAAAGAAACGCATCTATTTACTGAACCATT
ACCTGGAAGGCTTCCGTGGCACATTGTTCCGACAAACGATGTTTGCAGAGTTTGAACATACCATTCATTTAAAAGCCCAA
AATGGGGAAGCGTTGACGGCGGATATGCTTACTAAGGAATATTATGAGCTGAACAAGAAATACTTTGGCGAGAACGTGAC
CATTGATGAAGAAATCGGTTTGGAATGGGCTCGTATTCCACACTTCTACTATAATTACTATGTTTATCAATATGCAACTG
GAATCAGTGCAGCAACAGCATTGAGCAAGCAAATCCTTGAAGAAGGAGAGCCTGCTGTCAAAAGGTATCTGGAGTTCTTG
AAATCAGGAAGTTCCGATTATCCGATTGAAGTACTCAAAAAGGCCGGCGTCGATATGACAAAAGCCGAGCCTGTACAAGA
AGCCATGAATGTATTCGAAGAAAAATTAAATGAGTTGGAAGAACTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.505

98.182

0.496