Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   V1208_RS05735 Genome accession   NZ_CP143562
Coordinates   1305077..1305478 (+) Length   133 a.a.
NCBI ID   WP_024711139.1    Uniprot ID   A0A855JH23
Organism   Xanthomonas oryzae pv. oryzicola strain GD06     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1300077..1310478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1208_RS05715 (V1208_05715) tsaB 1301094..1301813 (+) 720 WP_014504137.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  V1208_RS05720 (V1208_05720) - 1301776..1302726 (+) 951 WP_048481699.1 ADP-ribosylglycohydrolase family protein -
  V1208_RS05725 (V1208_05725) - 1303017..1303892 (-) 876 WP_014504135.1 energy transducer TonB -
  V1208_RS05730 (V1208_05730) gshB 1303889..1304839 (-) 951 WP_014504134.1 glutathione synthase -
  V1208_RS05735 (V1208_05735) pilG 1305077..1305478 (+) 402 WP_024711139.1 twitching motility response regulator PilG Regulator
  V1208_RS05740 (V1208_05740) - 1305496..1305858 (+) 363 WP_014504132.1 response regulator -
  V1208_RS05745 (V1208_05745) - 1305858..1306388 (+) 531 WP_003482487.1 chemotaxis protein CheW -
  V1208_RS05750 (V1208_05750) - 1306428..1308464 (+) 2037 WP_014504131.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14681.06 Da        Isoelectric Point: 6.9539

>NTDB_id=929716 V1208_RS05735 WP_024711139.1 1305077..1305478(+) (pilG) [Xanthomonas oryzae pv. oryzicola strain GD06]
MTENIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=929716 V1208_RS05735 WP_024711139.1 1305077..1305478(+) (pilG) [Xanthomonas oryzae pv. oryzicola strain GD06]
ATGACTGAAAACATTGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTGATCGATGATTCGAAAACCATTCGCCG
CACCGCCGAAACGCTGCTGAAGCGGGAAGGTTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTTGTTGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAATCGACGCCGGTAATCATGTTGTCGTCCAAGGATGGGCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGTTCCGAGCAATATCTGACCAAGCCGTTCACCCGTGAAGAACTATTGAGCGCAATCCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855JH23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684