Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   V1M48_RS15265 Genome accession   NZ_CP143559
Coordinates   1131877..1133280 (+) Length   467 a.a.
NCBI ID   WP_005444697.1    Uniprot ID   -
Organism   Vibrio harveyi strain WHSS0915     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1126877..1138280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1M48_RS15260 (V1M48_15260) uvrB 1129521..1131551 (+) 2031 WP_005444695.1 excinuclease ABC subunit UvrB -
  V1M48_RS15265 (V1M48_15265) luxO 1131877..1133280 (+) 1404 WP_005444697.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  V1M48_RS15270 (V1M48_15270) luxU 1133277..1133621 (+) 345 WP_005444699.1 quorum-sensing phosphorelay protein LuxU -
  V1M48_RS15275 (V1M48_15275) - 1133736..1134629 (-) 894 WP_005444701.1 YvcK family protein -
  V1M48_RS15280 (V1M48_15280) moaA 1134927..1135916 (+) 990 WP_005444703.1 GTP 3',8-cyclase MoaA -
  V1M48_RS15285 (V1M48_15285) moaB 1136018..1136530 (+) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  V1M48_RS15290 (V1M48_15290) moaC 1136557..1137033 (+) 477 WP_005444714.1 cyclic pyranopterin monophosphate synthase MoaC -
  V1M48_RS15295 (V1M48_15295) moaD 1137033..1137290 (+) 258 WP_005444716.1 molybdopterin synthase sulfur carrier subunit -
  V1M48_RS15300 (V1M48_15300) moaE 1137292..1137747 (+) 456 WP_005444719.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52150.57 Da        Isoelectric Point: 5.8838

>NTDB_id=929688 V1M48_RS15265 WP_005444697.1 1131877..1133280(+) (luxO) [Vibrio harveyi strain WHSS0915]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
ASKFIEPDILTVSDIMPLWMTEKMAIEQAIQACDGNIPRAAGYLDVSPSTIYRKLQAWNSRDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=929688 V1M48_RS15265 WP_005444697.1 1131877..1133280(+) (luxO) [Vibrio harveyi strain WHSS0915]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCTGTCGCGGCATTGTACCG
TTCTTACCTAACGCCACTCGGCATCGATATCAATATTGTTGGTACAGGCAGAGACGCAATCGAAAGTCTGAACCACCGTA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGATGTATTGCACGCAGTGAAGAAAAGTCAC
CCAGACGTGCCAATTATCTTTATGACTGCCCATGGCTCTATCGATACTGCGGTAGAAGCAATGCGTCATGGTTCTCAAGA
TTTCTTAATTAAACCATGTGAAGCTGACCGTTTACGCGTCACGGTAAATAATGCGATCCGTAAAGCTACCAAGCTTAAAA
ATGAAGCGGATAATCCGGGCAACCAAAATTACCAAGGCTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGCACT
ATTGACTCGGCGGCGAGCAGTAAAGCAAGTATTTTCATCACGGGTGAAAGTGGTACTGGTAAAGAGGTGTGTGCCGAGGC
AATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCCATTAACTGTGCTGCCATCCCTAAAGATCTGATTGAGA
GCGAGCTATTTGGTCACGTAAAAGGTGCATTTACTGGCGCGGCAAATGACCGACAAGGTGCGGCTGAGCTTGCTGACGGT
GGCACTTTGTTTCTTGATGAGCTTTGTGAGATGGACCTAGACCTCCAGACAAAGTTACTAAGATTCATTCAAACGGGAAC
GTTCCAAAAAGTCGGTTCTTCGAAGATGAAGAGTGTGGACGTACGTTTTGTTTGCGCAACGAACCGCGACCCTTGGAAGG
AAGTGCAAGAAGGGCGTTTTCGTGAAGACTTGTACTATCGTTTGTACGTGATCCCATTGCACCTTCCACCGCTGCGTGAG
CGTGGCGAAGATGTAATTGAGATTGCTTATTCGTTGCTTGGTTATATGTCTCACGAAGAAGGCAAAAGCTTCATCCGCTT
CTCGCAAGAGGTGATTGATAGGTTCAATAGTTATGAATGGCCGGGTAACGTTCGTCAGTTGCAAAACGTACTGCGCAACA
TTGTGGTATTGAACAACGGCAAAGAGATTACGTTAGACATGCTGCCACCGCCGTTGAACCAGCCAGTGGTTCGTCAATCG
GCATCAAAATTTATTGAACCTGACATTTTGACGGTGTCAGACATTATGCCGCTTTGGATGACTGAGAAAATGGCCATCGA
GCAGGCGATTCAAGCGTGTGATGGCAATATTCCACGCGCTGCGGGCTACTTAGATGTCAGCCCATCGACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAGGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

95.931

0.833